ViewGene
Locus Name:
GeneID:
Location:

GeneID:4265
TrivialName: PA14_39800
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39800
PAO1 Ortholog Locus:PA1912
Sequence Length:507
Protein Length:168
Start: 3546403
Stop: 3546909
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05300.1|AE004617_4 (AE004617) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
Identities = 168/168 (100%), Positives = 168/168 (100%) with PA1912 of PAO1.
Sequence:
ATGCCGCCGGCCGACGCCTCCCTGCACGACGCTGTGAGCCATCTCTATCAGGACCACCATGGCTGGCTGCAA
GGCTGGTTGCGGCGACGCCTGGGCTGCGCGGAAAACGCCGCCGACCTGGCCCAGGACACCTTCGCCCGCCTG
CTCGCCTCGCGCCGGGTACTGGATGCGCGCGAACCGCGCGCCTACCTGACCACCGTCGCCAAGGGGCTGATG
ATCAACTGGTTCCAGCGCCAGTCGCTGGAGCGCGCCTACCTCGATGCCCTGGCCAACCTCCCGGAAGACCTC
GCGCCGCCGCCGGAACAGCGGTTGATGGTGCTGGAAACCCTGCATGAAGTAGACGCCCTGCTCGGCAGCCTG
CCGGACAGGGTCCGCCAGGCGTTTCTCCTGGCGCAGATCGAAGGCCTGAAGTACGAAGCCATCGCCGAGCGC
CTGGGCGTGTCCCTGGGCTCGGTCAAGCGCTACATGCAGCAGGCCTTCCGCCAGTGCCTGGAGCTGATGGAA
TGA
Translation:
MPPADASLHDAVSHLYQDHHGWLQGWLRRRLGCAENAADLAQDTFARLLASRRVLDAREPRAYLTTVAKGLM
INWFQRQSLERAYLDALANLPEDLAPPPEQRLMVLETLHEVDALLGSLPDRVRQAFLLAQIEGLKYEAIAER
LGVSLGSVKRYMQQAFRQCLELME*
AnnotationID:4271GeneID:4265
AnnotatorUID: danlee
Modification Date/Time: 2003-10-20 16:04:01
Gene Name:
Confidence Code:3
GeneProduct:probable sigma-70 factor, ECF subfamily
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
100% identical to PA1912 (probable sigma-70 factor, ECF subfamily) of PAO1.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8531




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25673




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4265
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6562
                           PA1912_tr
                           translation of PA1912
                           168
                           99.99
                           99.99
                           0
                           863.0
     

     
     
177794
                           gb|AAG05300.1|AE004617_4
                           (AE004617) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
                           168
                           99.99
                           99.99
                           0
                           863.0
     

     
     
177795
                           emb|CAD85010.1|
                           (BX321859) Sigma factor, ECF subfamily [Nitrosomonas europaea ATCC 19718]
                           168
                           69.64
                           79.76
                           1
                           597.0
     

     
     
177800
                           emb|CAE44681.1|
                           (BX640412) heme uptake regulator [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           169
                           55.62
                           71.59
                           1
                           455.0
     

     
     
177799
                           emb|CAE35015.1|
                           (BX640451) heme uptake regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           169
                           55.62
                           71.59
                           1
                           455.0
     

     






      

          
GC ORFID: 47267How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1912Glimmer Score: 

          
Start: 1407508Stop: 1407002

          
Length: 507


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1912 translation of PA1912Homolog Bit Score 337.0

          
Other Homologs:  t_PA3899 (ORF: BLASTX 181.0), psyr_15may02_Scaffold1_revised_gene1362 (ORF: BLASTX 178.0), t_PA2468 (ORF: BLASTX 171.0), psyr_15may02_Scaffold3_revised_gene5013 (ORF: BLASTX 169.0), psyr_15may02_Scaffold6_revised_gene6627 (ORF: BLASTX 163.0), t_PA0472 (ORF: BLASTX 160.0), t_PA4896 (ORF: BLASTX 159.0), t_PA2050 (ORF: BLASTX 137.0), t_PA1912 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCCGGCCGACGCCTCCCTGCACGACGCTGTGAGCCATCTCTATCAGGACCACCATGGCTGGCTGCAA 
GGCTGGTTGCGGCGACGCCTGGGCTGCGCGGAAAACGCCGCCGACCTGGCCCAGGACACCTTCGCCCGCCTG 
CTCGCCTCGCGCCGGGTACTGGATGCGCGCGAACCGCGCGCCTACCTGACCACCGTCGCCAAGGGGCTGATG 
ATCAACTGGTTCCAGCGCCAGTCGCTGGAGCGCGCCTACCTCGATGCCCTGGCCAACCTCCCGGAAGACCTC 
GCGCCGCCGCCGGAACAGCGGTTGATGGTGCTGGAAACCCTGCATGAAGTAGACGCCCTGCTCGGCAGCCTG 
CCGGACAGGGTCCGCCAGGCGTTTCTCCTGGCGCAGATCGAAGGCCTGAAGTACGAAGCCATCGCCGAGCGC 
CTGGGCGTGTCCCTGGGCTCGGTCAAGCGCTACATGCAGCAGGCCTTCCGCCAGTGCCTGGAGCTGATGGAA 
TGA