ViewGene

Locus Name:
GeneID:
Location:

GeneID:4263
TrivialName: PA14_50700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50700
PAO1 Ortholog Locus:PA1057
Sequence Length:525
Protein Length:174
Start: 4503236
Stop: 4502712
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04446.1|AE004537_11 (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 172/174 (98%), Positives = 174/174 (100%)
Sequence:
ATGATCAGCCGTTCGTTGCCGCGTCCGCTTCTTCGCGTATTGCCTCATCCCGTGCTTAGTGTCCTGCTGTTG
CTGGTCTGGTTGCTGCTGGTGGATTCCTTCGCCATCGGCCACTGGCTGCTCGGCGCCTTCCTCGGCGTGTGC
ATTCCGCTGCTGACCAACCGCCTGCTGGTCGGGCGCAGCCAGGAGTGGCATCCGTTGCTGCTGTTGAAGCTG
CTGGTGCTGGTGATGTGGGACATCCTCGTCGCCAATGTCCAGGTTGCCCGTCTGACCCTCGGACCGATCCAG
CGCTTGCGTCCGGCCTTCGTCGAGGTGCCGATCGAGCTGGAGAACGACCTCGCCATCAGCGTGCTGGTGAGC
ATCGTCTCGCTGACCCCGGGGTCGGTGTCGTCGGACCtCAGCGACGACCGCAAGACCCTGCTGGTGCACGGC
CTCGACGTGCCGGACAAGGCGGCGCTGATCGCCGAGATCAAGCAACGCTACGAAGCGCCGCTGAAGGAGATC
TTCCCaTGCTCGCTTACGTGA
Translation:
MISRSLPRPLLRVLPHPVLSVLLLLVWLLLVDSFAIGHWLLGAFLGVCIPLLTNRLLVGRSQEWHPLLLLKL
LVLVMWDILVANVQVARLTLGPIQRLRPAFVEVPIELENDLAISVLVSIVSLTPGSVSSDLSDDRKTLLVHG
LDVPDKAALIAEIKQRYEAPLKEIFPCSLT*
AnnotationID:4269GeneID:4263
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 15:03:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1057, phaE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1863
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1863, MnhE, Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion 
transport and metabolism]
      CD-Length = 158 residues,  99.4% aligned
      Score =  141 bits (356), Expect = 6e-35
Genomic Context:
This is in a cluster of genes homologous to the phaABCDEFG locus of Rhizobium 
meliloti (but the PAO1/PA14 locus lacks a phaB homolog).
Comment:
ReferenceID:8527
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25669
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32211
Author/Investigator(s): Putnoky P, Kereszt A, Nakamura T, Endre G, Grosskopf E, Kiss P, Kondorosi A.
Title: The pha gene cluster of Rhizobium meliloti involved in pH adaptation and symbiosis encodes a novel type of K+ efflux system.
PubMed: 98343795
MedLine:
Source:
Mol Microbiol. 1998 Jun;28(6):1091-101.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:4263

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6559 PA1057_tr translation of PA1057 174 98.85 99.99 0 865.0
177713 gb|AAG04446.1|AE004537_11 (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 174 98.85 99.99 0 865.0
177714 gb|AAM35350.1| (AE011673) PhaE protein [Xanthomonas axonopodis pv. citri str. 306] 178 43.82 60.67 14 346.0
177715 gb|AAM39761.1| (AE012142) PhaE protein [Xanthomonas campestris pv. campestris str. ATCC 33913] 181 42.54 59.11 20 337.0
177716 gb|AAN67840.1|AE016415_5 (AE016782) multicomponent potassium-proton antiporter, subunit E, putative [Pseudomonas putida KT2440] 178 37.64 53.37 20 260.0
GC ORFID: 47265How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1057Glimmer Score:
Start: 450672Stop: 451196
Length: 525
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1057 translation of PA1057Homolog Bit Score 337.0
Other Homologs: t_PA1057 (ORF: GLIMMER)
GC ORF Sequence
ATGATCAGCCGTTCGTTGCCGCGTCCGCTTCTTCGCGTATTGCCTCATCCCGTGCTTAGTGTCCTGCTGTTG
CTGGTCTGGTTGCTGCTGGTGGATTCCTTCGCCATCGGCCACTGGCTGCTCGGCGCCTTCCTCGGCGTGTGC
ATTCCGCTGCTGACCAACCGCCTGCTGGTCGGGCGCAGCCAGGAGTGGCATCCGTTGCTGCTGTTGAAGCTG
CTGGTGCTGGTGATGTGGGACATCCTCGTCGCCAATGTCCAGGTTGCCCGTCTGACCCTCGGACCGATCCAG
CGCTTGCGTCCGGCCTTCGTCGAGGTGCCGATCGAGCTGGAGAACGACCTCGCCATCAGCGTGCTGGTGAGC
ATCGTCTCGCTGACCCCGGGGTCGGTGTCGTCGGACCtCAGCGACGACCGCAAGACCCTGCTGGTGCACGGC
CTCGACGTGCCGGACAAGGCGGCGCTGATCGCCGAGATCAAGCAACGCTACGAAGCGCCGCTGAAGGAGATC
TTCCCaTGCTCGCTTACGTGA