ViewGene
Locus Name:
GeneID:
Location:

GeneID:4262
TrivialName: PA14_06310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06310
PAO1 Ortholog Locus:PA0484
Sequence Length:516
Protein Length:171
Start: 557917
Stop: 558432
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03873.1|AE004486_2 (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 171/171 (100%), Positives = 171/171 (100%)
Sequence:
ATGGATCACCTGGTCCTGACCGTGATCGCCACCGACCATCCCGGCCTGGTCGAGCGCATCGCCCAATGCATC
GCCTCCCACGGCGGCAACTGGCTGGAAAGCCGCATGTCGCGGATGGCCGGGCAGTTCGCCGGGATACTGCGG
GTGGCCGTGCCGGCGGAAGGCTACGACGAACTGGTGGAAGGGCTACAGGGCCTGTCCAGCCACGGTATCCGC
GTGCTCCTGGCGGAAAGCGGGATCGAGCCGGTATGCAACTGGAAGCCTATCCACCTCGACCTGGTGGGCAAC
GACCGCCCCGGTATCGTGCGTGACATCACCCGGCTGCTGGCCGAGCATGGGGTGAACCTGGAAAGCCTGTCC
ACCGAAGTGCGCCCGGCGCCGATGAGCAGCGAACCGCTGTTCCATGCCGATGCGCTGCTGGCGGTGCCGCTG
ACCCTGTCGCTGGACACCCTGCGCGAGCGACTGGAAGACCTGGCCGACGACCTGATGGTGGAATTGGTGCTG
GACGCGTCCTGA
Translation:
MDHLVLTVIATDHPGLVERIAQCIASHGGNWLESRMSRMAGQFAGILRVAVPAEGYDELVEGLQGLSSHGIR
VLLAESGIEPVCNWKPIHLDLVGNDRPGIVRDITRLLAEHGVNLESLSTEVRPAPMSSEPLFHADALLAVPL
TLSLDTLRERLEDLADDLMVELVLDAS*
AnnotationID:4268GeneID:4262
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:34
Gene Name:
Confidence Code:3
GeneProduct:putative ACT domain protein
Cell Localization:()
Synonyms:PA0484
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative glycine cleavage system regulatory protein
Functional Category Confidence Code:5
COGs:COG2716
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65988.1|AE016228_1 (AE016775) ACT domain protein [Pseudomonas putida KT2440]
          Length = 172

 Score =  263 bits (672), Expect = 3e-70
 Identities = 136/170 (80%), Positives = 146/170 (85%)

>gb|AAO54025.1| (AE016857) ACT domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 172

 Score =  224 bits (572), Expect = 1e-58
 Identities = 116/168 (69%), Positives = 136/168 (80%)






 
Structural Features:
COG2716, GcvR, Glycine cleavage system regulatory protein 
[Amino acid transport and metabolism]
CD-Length = 176 residues,  98.9% aligned
Score =  191 bits (487), Expect = 4e-50
Identities = 66/174 (37%), Positives = 100/174 (57%), Gaps = 3/174 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:8525




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25667




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33800




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4262_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4262
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6558
                           PA0484_tr
                           translation of PA0484
                           171
                           99.99
                           99.99
                           0
                           868.0
     

     
     
177709
                           gb|AAG03873.1|AE004486_2
                           (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           171
                           99.99
                           99.99
                           0
                           868.0
     

     
     
177710
                           gb|AAN65988.1|AE016228_1
                           (AE016775) ACT domain protein [Pseudomonas putida KT2440]
                           172
                           79.06
                           84.88
                           1
                           672.0
     

     
     
177711
                           gb|AAO54025.1|
                           (AE016857) ACT domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           172
                           67.44
                           79.06
                           1
                           571.0
     

     
     
177712
                           emb|CAA72725.1|
                           (Y11998) hypothetical protein [Pseudomonas fluorescens]
                           171
                           66.66
                           77.19
                           1
                           546.0
     

     






      

          
GC ORFID: 47264How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0484Glimmer Score: 

          
Start: 6359259Stop: 6359774

          
Length: 516


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0484 translation of PA0484Homolog Bit Score 338.0

          
Other Homologs:  t_PA0484 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATCACCTGGTCCTGACCGTGATCGCCACCGACCATCCCGGCCTGGTCGAGCGCATCGCCCAATGCATC 
GCCTCCCACGGCGGCAACTGGCTGGAAAGCCGCATGTCGCGGATGGCCGGGCAGTTCGCCGGGATACTGCGG 
GTGGCCGTGCCGGCGGAAGGCTACGACGAACTGGTGGAAGGGCTACAGGGCCTGTCCAGCCACGGTATCCGC 
GTGCTCCTGGCGGAAAGCGGGATCGAGCCGGTATGCAACTGGAAGCCTATCCACCTCGACCTGGTGGGCAAC 
GACCGCCCCGGTATCGTGCGTGACATCACCCGGCTGCTGGCCGAGCATGGGGTGAACCTGGAAAGCCTGTCC 
ACCGAAGTGCGCCCGGCGCCGATGAGCAGCGAACCGCTGTTCCATGCCGATGCGCTGCTGGCGGTGCCGCTG 
ACCCTGTCGCTGGACACCCTGCGCGAGCGACTGGAAGACCTGGCCGACGACCTGATGGTGGAATTGGTGCTG 
GACGCGTCCTGA