ViewGene
Locus Name:
GeneID:
Location:

GeneID:4260
TrivialName: PA14_03210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03210
PAO1 Ortholog Locus:PA0261
Sequence Length:498
Protein Length:165
Start: 285209
Stop: 284712
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03650.1|AE004464_3 (AE004464) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 164/165 (99%), Positives = 164/165 (99%)
Sequence:
ATGAAATGCAAGACCTTGCTCATTGCCTGCCTGTTCGGCCTGGGAAGCGTCCAGGCCCTGGCCGTTTCCAAA
CTGCCACCGCAGATCCCGGTGCACGCCGGCTCCGGGCGCGTGACCCTGGATCTACGCCCCTTGCTGGCGGAA
ACCAACGACGTCGAGATCACCCGTGTTTCGGTATGTCGGCGGGTCGGCAGCCATTGCCAGGAAACGCTGTGG
CGGATCGAGCTCCCGCCCGGGTGGCGTGCCGGGGAGATCGAGGTCTTCGGCGACTATCCCGGCTCCAGCGTG
CTCCTGCGCCGGCCGGAGCGCTTGCAGCCAGATGGGAGCTACAACGCATTCATTCATTTCAACGAGCGTAGC
CGTCGGCACCGGCAAACGGTTTCCAGCATTGCCGTCGAATTCTGCCTGGCCGGCGAACCTGGCAACTGGATG
CTGCTCGACGAAGCGACCTGCCTGGCACGACGCAACGCCGAGGAGCGGCAAGGAGAGAAGCCATGA
Translation:
MKCKTLLIACLFGLGSVQALAVSKLPPQIPVHAGSGRVTLDLRPLLAETNDVEITRVSVCRRVGSHCQETLW
RIELPPGWRAGEIEVFGDYPGSSVLLRRPERLQPDGSYNAFIHFNERSRRHRQTVSSIAVEFCLAGEPGNWM
LLDEATCLARRNAEERQGEKP*
AnnotationID:4266GeneID:4260
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0261
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8521




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25663




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4260
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6556
                           PA0261_tr
                           translation of PA0261
                           165
                           99.39
                           99.39
                           0
                           868.0
     

     
     
177703
                           gb|AAG03650.1|AE004464_3
                           (AE004464) hypothetical protein PA0261 [Pseudomonas aeruginosa PAO1]
                           165
                           99.39
                           99.39
                           0
                           868.0
     

     






      

          
GC ORFID: 47262How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0261Glimmer Score: 

          
Start: 6086550Stop: 6086053

          
Length: 498


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0261 translation of PA0261Homolog Bit Score 338.0

          
Other Homologs:  t_PA0261 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAATGCAAGACCTTGCTCATTGCCTGCCTGTTCGGCCTGGGAAGCGTCCAGGCCCTGGCCGTTTCCAAA 
CTGCCACCGCAGATCCCGGTGCACGCCGGCTCCGGGCGCGTGACCCTGGATCTACGCCCCTTGCTGGCGGAA 
ACCAACGACGTCGAGATCACCCGTGTTTCGGTATGTCGGCGGGTCGGCAGCCATTGCCAGGAAACGCTGTGG 
CGGATCGAGCTCCCGCCCGGGTGGCGTGCCGGGGAGATCGAGGTCTTCGGCGACTATCCCGGCTCCAGCGTG 
CTCCTGCGCCGGCCGGAGCGCTTGCAGCCAGATGGGAGCTACAACGCATTCATTCATTTCAACGAGCGTAGC 
CGTCGGCACCGGCAAACGGTTTCCAGCATTGCCGTCGAATTCTGCCTGGCCGGCGAACCTGGCAACTGGATG 
CTGCTCGACGAAGCGACCTGCCTGGCACGACGCAACGCCGAGGAGCGGCAAGGAGAGAAGCCATGA