ViewGene

Locus Name:
GeneID:
Location:

GeneID:426
TrivialName: PA14_29230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29230
PAO1 Ortholog Locus:PA2699
Sequence Length:1839
Protein Length:612
Start: 2530001
Stop: 2528163
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06087.1|AE004698_3 (AE004698) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 609/612 (99%), Positives = 610/612 (99%)
Sequence:
ATGACCGCCGACCTGATCCTGCACAACGGCCGCTTCCACACCGTGGACCGCGACAACCCCACCGCCACCGCC
GTGGCGATCAAGGACGGCAAGTTCCTTGCCGTCGGCAACGACGCCGAGGCGATGCTCCATCGCGGCAGCGCC
ACCCAGGTGATCGACCTGCAGAAGCGCACCGTGATCCCCGGTCTCAACGACTCGCACCTGCACCTGATCCGC
GGTGGCCTCAACTACAACCTGGAGCTGCGCTGGGAAGGCGTGCCCTCCCTGGCCGACGCCTTGCGCATGCTC
AAGAACCAGGCCGAACGCACGCCCAGCCCCCAGTGGGTGCGGGTGGTCGGCGGCTGGAACGAGTTCCAGTTC
GCCGAGAAGCGCATGCCGACCCTGGAGGAATTGAACAAGGCCGCGCCGGACACCCCGGTGTTCGTCCTCCAC
CTGTACGATCGCGCCCTGCTCAACCGCGCCGCCCTGCGCGTGGTCGGCTACACCAAGGACACGCCCAACCCG
CCCGGCGGCGAGATCGTCCGCGACAGCAGCGGCGAACCCACCGGCATGCTGATCGCCCGGCCCAACGCGATG
ATTCTCTACGCCACCCTGGCCAAGGGACCGAAGCTGCCGCTGGAGTACCAGGTCAACTCCACCCGCCAGTTC
ATGCGCGAACTCAACCGCCTCGGCCTGACTAGCGCGATCGACGCCGGCGGCGGCTTCCAGAACTACCCGGAC
GACTACCAGGTGATTCGCGAACTGGCCGACCAGGGCCAGCTCACCGTACGCATCGCCTACAACCTGTTCACC
CAGAAACCGAAGGAAGAACTCGCCGACTTCAAGAACTGGACCGGCAGCGTCAAGTACGGCCAGGGCAGCGAT
TTCTTCCGCCACAACGGCGCCGGCGAGATGCTAGTGTTCTCCGCCGCCGACTTCGAGGACTTCCTCGAACCG
CGCCCGGACCTGCCGCAGACCATGGAGCAGGAGCTGGAGCCGGTGGTCCGCCACCTGGTGGAGCAGCGCTGG
CCGTTCCGCCTGCACGCCACCTACGACGAATCGATCTCGCGGATGCTCGACGTGTTCGAGAAGGTCGACCGC
GACATTCCGTTCAACGGCCTGCCCTGGTTCTTCGACCACGCCGAGACCATCACCCCGCGCAACATCGAGCGG
GTGCGGGCACTCGGCGGCGGCATCGCGATCCAGGACCGCATGGCCTTCCAGGGCGAGTACTTCGTCGACCGC
TACGGTGCCAAGGCCGCCGAGGCCACGCCGCCGATCCAGCGCATGCTCGCCGAGGGCGTGCCGGTGGGTGCC
GGCACCGACGCCACCCGGGTCTCCAGCTACAACCCCTGGACCTCGCTGTACTGGCTGGTCAGCGGCCGCACC
GTCGGCGGCATGGCCCTGTATCCGCAGGGCCTGCCGCGGGAAACCGCGTTGCAGCTGTTCACCCACGGCAGC
GCCTGGTTCTCCAGCGAGCAGGGCAAGAAAGGACAGATCAAGGTTGGACAGCTCGCCGACCTGGCGGCGCTG
TCGGCGGACTTCTTCAGCGTCGAGGAAGAGGCCATCAAGTGGATCGAGTCGGTGCTCACGGTGGTCGACGGC
AAGATCGTCTATGCCGCCGCCGAGTTCGACAAGCTCGGTCCGCCGGCGCCGCCGGTGCTGCCGGACTGGTCG
CCGGTGGCCAAGGTACCCGGCCACTGGCGGCAAGGCGCGCCGCTGACCGCCCAGGTCCACCAGTGCGTCGGT
GCCTGCGCGGTACACGCCCACGAGCACAACCGCGCGCGCCACTCCAACGTACCGGTGAGCGACTTCCAGGGT
TTCTGGGGCGCATTCGGCTGTTCCTGCTTCGCTTTCTGA
Translation:
MTADLILHNGRFHTVDRDNPTATAVAIKDGKFLAVGNDAEAMLHRGSATQVIDLQKRTVIPGLNDSHLHLIR
GGLNYNLELRWEGVPSLADALRMLKNQAERTPSPQWVRVVGGWNEFQFAEKRMPTLEELNKAAPDTPVFVLH
LYDRALLNRAALRVVGYTKDTPNPPGGEIVRDSSGEPTGMLIARPNAMILYATLAKGPKLPLEYQVNSTRQF
MRELNRLGLTSAIDAGGGFQNYPDDYQVIRELADQGQLTVRIAYNLFTQKPKEELADFKNWTGSVKYGQGSD
FFRHNGAGEMLVFSAADFEDFLEPRPDLPQTMEQELEPVVRHLVEQRWPFRLHATYDESISRMLDVFEKVDR
DIPFNGLPWFFDHAETITPRNIERVRALGGGIAIQDRMAFQGEYFVDRYGAKAAEATPPIQRMLAEGVPVGA
GTDATRVSSYNPWTSLYWLVSGRTVGGMALYPQGLPRETALQLFTHGSAWFSSEQGKKGQIKVGQLADLAAL
SADFFSVEEEAIKWIESVLTVVDGKIVYAAAEFDKLGPPAPPVLPDWSPVAKVPGHWRQGAPLTAQVHQCVG
ACAVHAHEHNRARHSNVPVSDFQGFWGAFGCSCFAF*
AnnotationID:435GeneID:426
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 20:08:22
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA2699
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1574,cd01300
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL17794.1|AF361470_15 (AF361470) putative exoenzyme regulatory protein [Rhizobium
           leguminosarum bv. trifolii]
          Length = 625

 Score =  828 bits (2138), Expect = 0.0
 Identities = 400/624 (64%), Positives = 488/624 (78%), Gaps = 13/624 (2%)

Structural Features:
COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold
CD-Length = 535 residues,  99.6% aligned
Score =  403 bits (1036), Expect = 3e-113
Identities = 244/540 (45%), Positives = 320/540 (59%), Gaps = 12/540 (2%)

cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases.
CD-Length = 479 residues,  99.4% aligned
Score =  253 bits (645), Expect = 6e-68
Genomic Context:
Comment:
ReferenceID:855
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17997
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36307
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:426_cdd.html
URL:
Homologs By Global Alignment
Gene ID:426

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
716 PA2699_tr translation of PA2699 612 99.50 99.67 0 3235.0
32234 gb|AAG06087.1|AE004698_3 (AE004698) hypothetical protein PA2699 [Pseudomonas aeruginosa PAO1] 612 99.50 99.67 0 3235.0
32236 emb|CAD13767.1| (AL646058) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 612 84.47 91.33 0 2788.0
32235 gb|AAN70817.1|AE016726_1 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 660 80.00 86.06 48 2843.0
32237 gb|AAL44784.1| (AE009329) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] 625 65.60 78.24 13 2179.0
GC ORFID: 43428How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2699Glimmer Score:
Start: 2423925Stop: 2425763
Length: 1839
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2699 translation of PA2699Homolog Bit Score 1250.0
Other Homologs: t_PA2699 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGCCGACCTGATCCTGCACAACGGCCGCTTCCACACCGTGGACCGCGACAACCCCACCGCCACCGCC
GTGGCGATCAAGGACGGCAAGTTCCTTGCCGTCGGCAACGACGCCGAGGCGATGCTCCATCGCGGCAGCGCC
ACCCAGGTGATCGACCTGCAGAAGCGCACCGTGATCCCCGGTCTCAACGACTCGCACCTGCACCTGATCCGC
GGTGGCCTCAACTACAACCTGGAGCTGCGCTGGGAAGGCGTGCCCTCCCTGGCCGACGCCTTGCGCATGCTC
AAGAACCAGGCCGAACGCACGCCCAGCCCCCAGTGGGTGCGGGTGGTCGGCGGCTGGAACGAGTTCCAGTTC
GCCGAGAAGCGCATGCCGACCCTGGAGGAATTGAACAAGGCCGCGCCGGACACCCCGGTGTTCGTCCTCCAC
CTGTACGATCGCGCCCTGCTCAACCGCGCCGCCCTGCGCGTGGTCGGCTACACCAAGGACACGCCCAACCCG
CCCGGCGGCGAGATCGTCCGCGACAGCAGCGGCGAACCCACCGGCATGCTGATCGCCCGGCCCAACGCGATG
ATTCTCTACGCCACCCTGGCCAAGGGACCGAAGCTGCCGCTGGAGTACCAGGTCAACTCCACCCGCCAGTTC
ATGCGCGAACTCAACCGCCTCGGCCTGACTAGCGCGATCGACGCCGGCGGCGGCTTCCAGAACTACCCGGAC
GACTACCAGGTGATTCGCGAACTGGCCGACCAGGGCCAGCTCACCGTACGCATCGCCTACAACCTGTTCACC
CAGAAACCGAAGGAAGAACTCGCCGACTTCAAGAACTGGACCGGCAGCGTCAAGTACGGCCAGGGCAGCGAT
TTCTTCCGCCACAACGGCGCCGGCGAGATGCTAGTGTTCTCCGCCGCCGACTTCGAGGACTTCCTCGAACCG
CGCCCGGACCTGCCGCAGACCATGGAGCAGGAGCTGGAGCCGGTGGTCCGCCACCTGGTGGAGCAGCGCTGG
CCGTTCCGCCTGCACGCCACCTACGACGAATCGATCTCGCGGATGCTCGACGTGTTCGAGAAGGTCGACCGC
GACATTCCGTTCAACGGCCTGCCCTGGTTCTTCGACCACGCCGAGACCATCACCCCGCGCAACATCGAGCGG
GTGCGGGCACTCGGCGGCGGCATCGCGATCCAGGACCGCATGGCCTTCCAGGGCGAGTACTTCGTCGACCGC
TACGGTGCCAAGGCCGCCGAGGCCACGCCGCCGATCCAGCGCATGCTCGCCGAGGGCGTGCCGGTGGGTGCC
GGCACCGACGCCACCCGGGTCTCCAGCTACAACCCCTGGACCTCGCTGTACTGGCTGGTCAGCGGCCGCACC
GTCGGCGGCATGGCCCTGTATCCGCAGGGCCTGCCGCGGGAAACCGCGTTGCAGCTGTTCACCCACGGCAGC
GCCTGGTTCTCCAGCGAGCAGGGCAAGAAAGGACAGATCAAGGTTGGACAGCTCGCCGACCTGGCGGCGCTG
TCGGCGGACTTCTTCAGCGTCGAGGAAGAGGCCATCAAGTGGATCGAGTCGGTGCTCACGGTGGTCGACGGC
AAGATCGTCTATGCCGCCGCCGAGTTCGACAAGCTCGGTCCGCCGGCGCCGCCGGTGCTGCCGGACTGGTCG
CCGGTGGCCAAGGTACCCGGCCACTGGCGGCAAGGCGCGCCGCTGACCGCCCAGGTCCACCAGTGCGTCGGT
GCCTGCGCGGTACACGCCCACGAGCACAACCGCGCGCGCCACTCCAACGTACCGGTGAGCGACTTCCAGGGT
TTCTGGGGCGCATTCGGCTGTTCCTGCTTCGCTTTCTGA