ViewGene
Locus Name:
GeneID:
Location:

GeneID:4258
TrivialName: PA14_63680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63680
PAO1 Ortholog Locus:PA4817
Sequence Length:495
Protein Length:164
Start: 5678016
Stop: 5678510
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08202.1|AE004895_2 (AE004895) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 160/164 (97%), Positives = 163/164 (99%)
Sequence:
ATGGCGGGAGGACCCACGGCACTGACGCTCATCGCCCGGACGAGCGCAACGGGCGCGCAGCCACTATCATTG
CGCGCCCGTTTTCCCCGCCCCCGCCCGCCGATGAAGAAGATCCCGCTCGCCGCCGCCGACCCCGACCGCCTG
GATACCTGGGTGAAATACCGCGAAGGCCTGTGCGGCGAGTGCAACGCGACCTGCTGCACGCTGCCGGTGGAA
GTGCGCATCGACGACCTGATCCGCATGCGACTGGTCGACGAGTTCGAGCGCGAGGAGCCGGCCAAGCGAATC
GCCAAGCGACTGGAAAAGGATGGCGTGATCGAGCACTTCAACCACAAGCGCGAGATCTTCACCCTCACCCGC
ATGGCCAACGGCGACTGCCTGTACCTCGACCGCAAGACCCGCCTGTGCACCATCTATGCCCGCCGCCCGGAC
ACCTGCCGCAACCACCCGCGCATCGGCCCGCGTCCCGGCCACTGCGCCTACCGGCCGAAGTAG
Translation:
MAGGPTALTLIARTSATGAQPLSLRARFPRPRPPMKKIPLAAADPDRLDTWVKYREGLCGECNATCCTLPVE
VRIDDLIRMRLVDEFEREEPAKRIAKRLEKDGVIEHFNHKREIFTLTRMANGDCLYLDRKTRLCTIYARRPD
TCRNHPRIGPRPGHCAYRPK*
AnnotationID:4264GeneID:4258
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4817
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8517




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25659




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35230




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4258_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4258
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6554
                           PA4817_tr
                           translation of PA4817
                           164
                           97.56
                           99.39
                           0
                           868.0
     

     
     
177583
                           gb|AAG08202.1|AE004895_2
                           (AE004895) hypothetical protein PA4817 [Pseudomonas aeruginosa PAO1]
                           164
                           97.56
                           99.39
                           0
                           868.0
     

     
     
177584
                           gb|AAN70607.1|AE016703_7
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           185
                           49.72
                           63.78
                           41
                           502.0
     

     
     
177585
                           gb|AAQ57959.1|
                           (AE016910) hypothetical protein CV0280 [Chromobacterium violaceum ATCC 12472]
                           170
                           46.47
                           59.41
                           47
                           462.0
     

     
     
177586
                           gb|AAN57322.1|AE015868_9
                           (AE015868) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           165
                           43.03
                           50.90
                           58
                           404.0
     

     






      

          
GC ORFID: 47260How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4817Glimmer Score: 

          
Start: 4941696Stop: 4942190

          
Length: 495


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4817 translation of PA4817Homolog Bit Score 338.0

          
Other Homologs:  t_PA4817 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGGGAGGACCCACGGCACTGACGCTCATCGCCCGGACGAGCGCAACGGGCGCGCAGCCACTATCATTG 
CGCGCCCGTTTTCCCCGCCCCCGCCCGCCGATGAAGAAGATCCCGCTCGCCGCCGCCGACCCCGACCGCCTG 
GATACCTGGGTGAAATACCGCGAAGGCCTGTGCGGCGAGTGCAACGCGACCTGCTGCACGCTGCCGGTGGAA 
GTGCGCATCGACGACCTGATCCGCATGCGACTGGTCGACGAGTTCGAGCGCGAGGAGCCGGCCAAGCGAATC 
GCCAAGCGACTGGAAAAGGATGGCGTGATCGAGCACTTCAACCACAAGCGCGAGATCTTCACCCTCACCCGC 
ATGGCCAACGGCGACTGCCTGTACCTCGACCGCAAGACCCGCCTGTGCACCATCTATGCCCGCCGCCCGGAC 
ACCTGCCGCAACCACCCGCGCATCGGCCCGCGTCCCGGCCACTGCGCCTACCGGCCGAAGTAG