ViewGene
Locus Name:
GeneID:
Location:

GeneID:4257
TrivialName: PA14_60960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60960
PAO1 Ortholog Locus:PA4607
Sequence Length:507
Protein Length:168
Start: 5439155
Stop: 5438649
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07995.1|AE004875_1 (AE004875) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 168/168 (100%), Positives = 168/168 (100%)
Sequence:
ATGGACAAGCGACTTTTGAGCAAGGGGTTGGTTCTGGGGCTGCTGAGCCTGGGCAGCATGACGGCACACGCC
GACGCGGCAGGCGGTAATGGCTGTGGTTGGGGCAACATGGTGTTCGAGGGCCAGCGCGGCCTGTTCCCGCAC
CTGCTGGCCACCACCACCAACGGTACCTCGGGCAACGCCACCTTCGGCATGACCTCCGGGACCAACGGTTGC
AACACCAATGCACGCCTGGGCTACGGCGGCCGCTCGATCTTCGCCATGAACGGGATGCTCGACAACATCGCC
GAGGACATGGCCAAGGGCCAGGGCGAAGCGCTCGACGCCTATGCCGTGCTGCTCGGCGTGGAAGCCAAGGAC
CGGGCGCACTTCGCCCAGGTCACCCAGCAGCATTTCGGCGAGATCTTCGCGAGCAAGGATGCGACGGGCGAG
CAGGTCCTGAGCAACACCCTGGCGGTGATGAGTCGCGACGGCACCCTGGCGCGCTACGCCAAGCAACCGGCC
TGA
Translation:
MDKRLLSKGLVLGLLSLGSMTAHADAAGGNGCGWGNMVFEGQRGLFPHLLATTTNGTSGNATFGMTSGTNGC
NTNARLGYGGRSIFAMNGMLDNIAEDMAKGQGEALDAYAVLLGVEAKDRAHFAQVTQQHFGEIFASKDATGE
QVLSNTLAVMSRDGTLARYAKQPA*
AnnotationID:4263GeneID:4257
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4607
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8515




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25657




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4257
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6552
                           PA4607_tr
                           translation of PA4607
                           168
                           99.99
                           99.99
                           0
                           867.0
     

     
     
177579
                           gb|AAG07995.1|AE004875_1
                           (AE004875) hypothetical protein PA4607 [Pseudomonas aeruginosa PAO1]
                           168
                           99.99
                           99.99
                           0
                           867.0
     

     
     
177580
                           gb|AAN66304.1|AE016259_2
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           172
                           59.30
                           72.67
                           5
                           507.0
     

     
     
6553
                           PA4578_tr
                           translation of PA4578
                           169
                           54.43
                           69.82
                           8
                           500.0
     

     
     
177582
                           gb|AAG07966.1|AE004871_6
                           (AE004871) hypothetical protein PA4578 [Pseudomonas aeruginosa PAO1]
                           169
                           54.43
                           69.82
                           8
                           500.0
     

     






      

          
GC ORFID: 47259How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4607Glimmer Score: 

          
Start: 4702835Stop: 4702329

          
Length: 507


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4607 translation of PA4607Homolog Bit Score 338.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5635 (ORF: BLASTX 199.0), t_PA4578 (ORF: BLASTX 197.0), t_PA4607 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAAGCGACTTTTGAGCAAGGGGTTGGTTCTGGGGCTGCTGAGCCTGGGCAGCATGACGGCACACGCC 
GACGCGGCAGGCGGTAATGGCTGTGGTTGGGGCAACATGGTGTTCGAGGGCCAGCGCGGCCTGTTCCCGCAC 
CTGCTGGCCACCACCACCAACGGTACCTCGGGCAACGCCACCTTCGGCATGACCTCCGGGACCAACGGTTGC 
AACACCAATGCACGCCTGGGCTACGGCGGCCGCTCGATCTTCGCCATGAACGGGATGCTCGACAACATCGCC 
GAGGACATGGCCAAGGGCCAGGGCGAAGCGCTCGACGCCTATGCCGTGCTGCTCGGCGTGGAAGCCAAGGAC 
CGGGCGCACTTCGCCCAGGTCACCCAGCAGCATTTCGGCGAGATCTTCGCGAGCAAGGATGCGACGGGCGAG 
CAGGTCCTGAGCAACACCCTGGCGGTGATGAGTCGCGACGGCACCCTGGCGCGCTACGCCAAGCAACCGGCC 
TGA