ViewGene

Locus Name:
GeneID:
Location:

GeneID:4256
TrivialName: PA14_60360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60360
PAO1 Ortholog Locus:PA4559
Sequence Length:510
Protein Length:169
Start: 5379422
Stop: 5378913
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07947.1|AE004869_11 (AE004869) prolipoprotein signal peptidase [Pseudomonas aeruginosa PAO1]
Identities = 166/169 (98%), Positives = 168/169 (99%)
Sequence:
ATGCCTGAGGTCGATCGTTTCGGGCGCTTGCCCTGGCTGTGGATCACCGTGCTGGTGTTCGTCCTCGACCAG
CTCAGCAAGGCGTTCTTCCAGGCCGAACTGAGCATGTACCAGCAGATCGTGGTGATCCCCGATCTGTTCAGT
TGGACCCTGGCCTACAACACCGGTGCCGCCTTCAGCTTCCTGGCCGACAGCTCGGGCTGGCAGCGCTGGCTG
TTCGCCCTGATCGCCATCGTCGTCAGCGCGATCCTGGTGGTCTGGCTGAAACGCCTGAAGAAAGGCGAGACC
TGGTTGGCCATCGCCCTGGCGCTGGTGCTCGGTGGCGCCCTGGGCAACCTCTACGACCGCATGGTTCTTGGC
CACGTGGTGGACTTCATCCTGGTGCACTGGCAGAACCGCTGGTACTTCCCGGCGTTCAACCTGGCCGATAGC
GCCATCACCGTCGGCGCCGTCATGTTGGCGCTCGACATGTTCAGATCGAAGAAATCCGGAGAAGCCGCCCAT
GGCTGA
Translation:
MPEVDRFGRLPWLWITVLVFVLDQLSKAFFQAELSMYQQIVVIPDLFSWTLAYNTGAAFSFLADSSGWQRWL
FALIAIVVSAILVVWLKRLKKGETWLAIALALVLGGALGNLYDRMVLGHVVDFILVHWQNRWYFPAFNLADS
AITVGAVMLALDMFRSKKSGEAAHG*
AnnotationID:4262GeneID:4256
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 06:06:16
Gene Name:lspA
Confidence Code:2
GeneProduct:lipoprotein signal peptidase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01252,COG0597
Secondary Functional Category(ies):
EC Number:3.4.23.36
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54349.1| (AE016858) lipoprotein signal peptidase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 173

 Score =  279 bits (714), Expect = 4e-75
 Identities = 129/161 (80%), Positives = 149/161 (92%)

>gb|AAM87247.1|AE013973_6 (AE013973) prolipoprotein signal peptidase (SPase II) [Yersinia
           pestis KIM]
          Length = 169

 Score =  145 bits (365), Expect = 1e-34
 Identities = 76/151 (50%), Positives = 101/151 (66%), Gaps = 2/151 (1%)
Structural Features:
pfam01252, Peptidase_A8, Signal peptidase (SPase) II.
CD-Length = 152 residues,  96.7% aligned
Score =  148 bits (374), Expect = 9e-37
Identities = 72/152 (47%), Positives = 90/152 (59%), Gaps = 5/152 (3%)

COG0597, LspA, Lipoprotein signal peptidase 
[Cell envelope biogenesis, outer membrane / 
Intracellular trafficking and secretion]
CD-Length = 167 residues,  95.8% aligned
Score =  147 bits (373), Expect = 1e-36
Identities = 79/165 (47%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Genomic Context:
Comment:
ReferenceID:8513
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25655
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31654
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4256_cdd.html
URL:
ReferenceID:33017
Author/Investigator(s): Yu F, Yamada H, Daishima K, Mizushima S.
Title: Nucleotide sequence of the lspA gene, the structural gene for lipoprotein signal peptidase of Escherichia coli.
PubMed: 6378662
MedLine:
Source:
FEBS Lett. 1984 Jul 23;173(1):264-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6378662
ReferenceID:33018
Author/Investigator(s): Yamada H, Kitagawa M, Kawakami M, Mizushima S.
Title: The gene coding for lipoprotein signal peptidase (lspA) and that for isoleucyl-tRNA synthetase (ileS) constitute a cotranscriptional unit in Escherichia coli.
PubMed: 6373377
MedLine:
Source:
FEBS Lett. 1984 Jun 11;171(2):245-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6373377
ReferenceID:33019
Author/Investigator(s): Yamagata H, Taguchi N, Daishima K, Mizushima S.
Title: Genetic characterization of a gene for prolipoprotein signal peptidase in Escherichia coli.
PubMed: 6227793
MedLine:
Source:
Mol Gen Genet. 1983;192(1-2):10-4.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6227793
Homologs By Global Alignment
Gene ID:4256

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6551 PA4559_tr translation of PA4559 169 98.22 99.40 0 866.0
177528 gb|AAG07947.1|AE004869_11 (AE004869) prolipoprotein signal peptidase [Pseudomonas aeruginosa PAO1] 169 98.22 99.40 0 866.0
177531 gb|AAA25884.1| (M35366) signal peptidase II [Pseudomonas fluorescens] 170 77.05 87.64 1 696.0
177529 gb|AAO54349.1| (AE016858) lipoprotein signal peptidase [Pseudomonas syringae pv. tomato str. DC3000] 173 75.72 87.86 4 713.0
177530 gb|AAN66230.1|AE016251_6 (AE016776) lipoprotein signal peptidase [Pseudomonas putida KT2440] 176 75.00 84.65 7 710.0
GC ORFID: 47258How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4559Glimmer Score:
Start: 4643101Stop: 4642592
Length: 510
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4559 translation of PA4559Homolog Bit Score 338.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3535 (ORF: BLASTX 282.0), t_PA4559 (ORF: GLIMMER)
GC ORF Sequence
ATGCCTGAGGTCGATCGTTTCGGGCGCTTGCCCTGGCTGTGGATCACCGTGCTGGTGTTCGTCCTCGACCAG
CTCAGCAAGGCGTTCTTCCAGGCCGAACTGAGCATGTACCAGCAGATCGTGGTGATCCCCGATCTGTTCAGT
TGGACCCTGGCCTACAACACCGGTGCCGCCTTCAGCTTCCTGGCCGACAGCTCGGGCTGGCAGCGCTGGCTG
TTCGCCCTGATCGCCATCGTCGTCAGCGCGATCCTGGTGGTCTGGCTGAAACGCCTGAAGAAAGGCGAGACC
TGGTTGGCCATCGCCCTGGCGCTGGTGCTCGGTGGCGCCCTGGGCAACCTCTACGACCGCATGGTTCTTGGC
CACGTGGTGGACTTCATCCTGGTGCACTGGCAGAACCGCTGGTACTTCCCGGCGTTCAACCTGGCCGATAGC
GCCATCACCGTCGGCGCCGTCATGTTGGCGCTCGACATGTTCAGATCGAAGAAATCCGGAGAAGCCGCCCAT
GGCTGA