ViewGene
Locus Name:
GeneID:
Location:

GeneID:4255
TrivialName: PA14_14520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14520
PAO1 Ortholog Locus:PA3826
Sequence Length:498
Protein Length:165
Start: 1242002
Stop: 1241505
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07213.1|AE004800_2 (AE004800) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 163/165 (98%), Positives = 165/165 (100%)
Sequence:
ATGCCGAAACACATGCTTTCTCCCCAGGGCGACTATGCCCCTGCCGGTCTGGTCCGCCGCCTGGCGGCGATG
TTCTACGACTTCCTGCTCTGCGTGGCGCTGATGATGGTGGTCACCCTGGTTTACCAGCAAGGCATCCTTCGA
CTGATCTACGGCAGCGAGCATCTGCGCGAACTGGCCGACCGCGGCGCGCTGATCGGCGACCCGCTGCTCTCG
ACCCTGCTGGTGTTCGCCCTGTTCGGCTTCTTCGCCAAATTCTGGACCCACAACGGCCAGACCCTGGGCATG
CAGGTCTGGGGACTGCGCGTGCAGAACCGCGACGGCAGCGCCATCAGCCTGCTCCAGGCGCTGCTGCGCTTC
ATGATCGCCATCGCCTCCTGGCTGTGCCTCGGCCTCGGCTTCCTCTGGATGCTCTGGGACAAGGACAAGCGT
ACCTGGCACGACCGCTATTCGGAGAGCCAGGTGGTCAGGCTGCCGAAGAACACTCACAAGAAGTGA
Translation:
MPKHMLSPQGDYAPAGLVRRLAAMFYDFLLCVALMMVVTLVYQQGILRLIYGSEHLRELADRGALIGDPLLS
TLLVFALFGFFAKFWTHNGQTLGMQVWGLRVQNRDGSAISLLQALLRFMIAIASWLCLGLGFLWMLWDKDKR
TWHDRYSESQVVRLPKNTHKK*
AnnotationID:4261GeneID:4255
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 20:08:29
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06271,COG1714
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO09918.1|AE016801_237 (AE016801) Predicted membrane protein/domain [Vibrio vulnificus
           CMCP6]
          Length = 158

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 17/156 (10%)








 
Structural Features:
pfam06271, RDD, RDD family.
CD-Length = 136 residues,  99.3% aligned
Score =  101 bits (252), Expect = 1e-22
Identities = 56/145 (38%), Positives = 75/145 (51%), Gaps = 11/145 (7%)

COG1714, Predicted membrane protein/domain 
CD-Length = 172 residues,  91.3% aligned
Score = 79.0 bits (194), Expect = 5e-16
Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 9/165 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8511




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25653




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31731




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4255_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4255
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6550
                           PA3826_tr
                           translation of PA3826
                           165
                           98.78
                           99.99
                           0
                           867.0
     

     
     
177526
                           gb|AAG07213.1|AE004800_2
                           (AE004800) hypothetical protein PA3826 [Pseudomonas aeruginosa PAO1]
                           165
                           98.78
                           99.99
                           0
                           867.0
     

     
     
177527
                           gb|AAN66609.1|AE016288_8
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           165
                           69.69
                           80.00
                           3
                           587.0
     

     






      

          
GC ORFID: 47257How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3826Glimmer Score: 

          
Start: 3711936Stop: 3712433

          
Length: 498


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3826 translation of PA3826Homolog Bit Score 338.0

          
Other Homologs:  t_PA3826 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGAAACACATGCTTTCTCCCCAGGGCGACTATGCCCCTGCCGGTCTGGTCCGCCGCCTGGCGGCGATG 
TTCTACGACTTCCTGCTCTGCGTGGCGCTGATGATGGTGGTCACCCTGGTTTACCAGCAAGGCATCCTTCGA 
CTGATCTACGGCAGCGAGCATCTGCGCGAACTGGCCGACCGCGGCGCGCTGATCGGCGACCCGCTGCTCTCG 
ACCCTGCTGGTGTTCGCCCTGTTCGGCTTCTTCGCCAAATTCTGGACCCACAACGGCCAGACCCTGGGCATG 
CAGGTCTGGGGACTGCGCGTGCAGAACCGCGACGGCAGCGCCATCAGCCTGCTCCAGGCGCTGCTGCGCTTC 
ATGATCGCCATCGCCTCCTGGCTGTGCCTCGGCCTCGGCTTCCTCTGGATGCTCTGGGACAAGGACAAGCGT 
ACCTGGCACGACCGCTATTCGGAGAGCCAGGTGGTCAGGCTGCCGAAGAACACTCACAAGAAGTGA