ViewGene
Locus Name:
GeneID:
Location:

GeneID:4253
TrivialName: PA14_50890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50890
PAO1 Ortholog Locus:PA1040
Sequence Length:498
Protein Length:165
Start: 4523092
Stop: 4523589
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04429.1|AE004536_8 (AE004536) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 164/165 (99%), Positives = 164/165 (99%)
Sequence:
ATGAGCGAACCGATTTCTCCCCGCACCCCGCAGCAGGCCCTGGCCGCGTTGCTCGCCCGCTACGCGCCGAAG
CGCTTGCTGCTGGTCGGCGCCAGCCGGCTGCCGGCGGTGGAGGCCTTCATCCACAACCATCCCCAGTGCCAA
CTGGCGCACAGCCCGGCGGCGGCATTGCCCGCCGAACTGGCCGGTCAGCGCTTCGACCTGGCGCTGTTCGTC
GATTGCCTGGAACACCTGCCGCAGCGCACCGGTCTGCAGTTGCTCGCGGGCGTGCGCAACCTGAACGCCAGC
CGGGTGGCCGTACTGGTCGACCTCGAGGCCAGCGACTGGCAGGAAACCGACTTCTTCGCCCTCGCCATGCAG
AACAGCGAACGCTTCCAGCGCGAAGGCCAGACGCTGACCCTGTACACCTACGACCTGTACGAGTACAAGCAG
GTCCCCGATTGGCTGAACGCCAAGTTCTGGGCCAACCCGGAAAACTTCGGCAAGTACTGGTGGTAA
Translation:
MSEPISPRTPQQALAALLARYAPKRLLLVGASRLPAVEAFIHNHPQCQLAHSPAAALPAELAGQRFDLALFV
DCLEHLPQRTGLQLLAGVRNLNASRVAVLVDLEASDWQETDFFALAMQNSERFQREGQTLTLYTYDLYEYKQ
VPDWLNAKFWANPENFGKYWW*
AnnotationID:4259GeneID:4253
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 18:06:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1040
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8507




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25649




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4253
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6548
                           PA1040_tr
                           translation of PA1040
                           165
                           99.39
                           99.39
                           0
                           867.0
     

     
     
177467
                           gb|AAG04429.1|AE004536_8
                           (AE004536) hypothetical protein PA1040 [Pseudomonas aeruginosa PAO1]
                           165
                           99.39
                           99.39
                           0
                           867.0
     

     
     
177468
                           gb|AAO57582.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           165
                           70.30
                           82.42
                           0
                           629.0
     

     
     
177469
                           gb|AAN66745.1|AE016302_7
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           165
                           69.09
                           81.81
                           1
                           609.0
     

     






      

          
GC ORFID: 47255How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1040Glimmer Score: 

          
Start: 430816Stop: 430319

          
Length: 498


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1040 translation of PA1040Homolog Bit Score 338.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6088 (ORF: BLASTX 243.0), t_PA1040 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAACCGATTTCTCCCCGCACCCCGCAGCAGGCCCTGGCCGCGTTGCTCGCCCGCTACGCGCCGAAG 
CGCTTGCTGCTGGTCGGCGCCAGCCGGCTGCCGGCGGTGGAGGCCTTCATCCACAACCATCCCCAGTGCCAA 
CTGGCGCACAGCCCGGCGGCGGCATTGCCCGCCGAACTGGCCGGTCAGCGCTTCGACCTGGCGCTGTTCGTC 
GATTGCCTGGAACACCTGCCGCAGCGCACCGGTCTGCAGTTGCTCGCGGGCGTGCGCAACCTGAACGCCAGC 
CGGGTGGCCGTACTGGTCGACCTCGAGGCCAGCGACTGGCAGGAAACCGACTTCTTCGCCCTCGCCATGCAG 
AACAGCGAACGCTTCCAGCGCGAAGGCCAGACGCTGACCCTGTACACCTACGACCTGTACGAGTACAAGCAG 
GTCCCCGATTGGCTGAACGCCAAGTTCTGGGCCAACCCGGAAAACTTCGGCAAGTACTGGTGGTAA