ViewGene

Locus Name:
GeneID:
Location:

GeneID:4252
TrivialName: PA14_60090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60090
PAO1 Ortholog Locus:
Sequence Length:516
Protein Length:171
Start: 5352790
Stop: 5353305
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84134.1| (AY273869) hypothetical protein RL007 [Pseudomonas aeruginosa]
Identities = 171/171 (100%), Positives = 171/171 (100%)
Sequence:
ATGAGCTCTCCAACCTCAGTAGTTGCGTTGGTCCTTAGCCTTTTATCAATCGCTGCCACAAAACCTGTGGAG
CGATTGTTCGATGCCCAGCGAGCAGAGCTACAAATCTCCATCACGGGTGGTGATTACAAAGCTGCCCAGCTT
ATGTTGACCAATAACGGGTCAAAGCCTGCAACTTTAGTTTCCTTCGAAATCACATCGAAAGCCACGACCAAT
ACGAAAACATGGTTTTTGGTAAGCAATACGGATGGCGAAATTCTGGAGCCAGGCAAAACTTACAAAATCAGG
GCCTCAACCGATGAGTCTATCCCAAAAATTGTCGAAGCTGAGCGTCGGACGATTTTGAAGTCTCAGTACGCA
CTTGCAGATAATTGCGAATTAACCGCTAAATACATAGAGGCCACGGGGCAGAAGGTTGTGCGTGTGCAACCG
TTCATGTGCGACACACCTCCTGAAAAGGGTGGCCTGCCCCCTGGTAAACCTGGCATACCCATTTGGTACCTT
GGTCAAGAATGA
Translation:
MSSPTSVVALVLSLLSIAATKPVERLFDAQRAELQISITGGDYKAAQLMLTNNGSKPATLVSFEITSKATTN
TKTWFLVSNTDGEILEPGKTYKIRASTDESIPKIVEAERRTILKSQYALADNCELTAKYIEATGQKVVRVQP
FMCDTPPEKGGLPPGKPGIPIWYLGQE*
AnnotationID:4258GeneID:4252
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 23:11:41
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8505
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25647
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4252

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
177466 gb|AAP84134.1| (AY273869) hypothetical protein RL007 [Pseudomonas aeruginosa] 171 99.99 99.99 0 869.0
GC ORFID: 47254How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL007Glimmer Score:
Start: 4616469Stop: 4616984
Length: 516
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL007 171 Homolog: No significant similarity () translation of RL007Homolog Bit Score 339.0
Other Homologs:
GC ORF Sequence
ATGAGCTCTCCAACCTCAGTAGTTGCGTTGGTCCTTAGCCTTTTATCAATCGCTGCCACAAAACCTGTGGAG
CGATTGTTCGATGCCCAGCGAGCAGAGCTACAAATCTCCATCACGGGTGGTGATTACAAAGCTGCCCAGCTT
ATGTTGACCAATAACGGGTCAAAGCCTGCAACTTTAGTTTCCTTCGAAATCACATCGAAAGCCACGACCAAT
ACGAAAACATGGTTTTTGGTAAGCAATACGGATGGCGAAATTCTGGAGCCAGGCAAAACTTACAAAATCAGG
GCCTCAACCGATGAGTCTATCCCAAAAATTGTCGAAGCTGAGCGTCGGACGATTTTGAAGTCTCAGTACGCA
CTTGCAGATAATTGCGAATTAACCGCTAAATACATAGAGGCCACGGGGCAGAAGGTTGTGCGTGTGCAACCG
TTCATGTGCGACACACCTCCTGAAAAGGGTGGCCTGCCCCCTGGTAAACCTGGCATACCCATTTGGTACCTT
GGTCAAGAATGA