ViewGene
Locus Name:
GeneID:
Location:

GeneID:4250
TrivialName: PA14_21520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21520
PAO1 Ortholog Locus:PA3288
Sequence Length:504
Protein Length:167
Start: 1866255
Stop: 1866758
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06676.1|AE004751_2 (AE004751) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 166/167 (99%), Positives = 167/167 (100%)
Sequence:
ATGCCTGGCCTGTTCTTCCGGAGCCGACTACCGATGCGCCAGGCCCTGCTGATCGTCGACGTGCAACCCTGT
TTCGCCCCGCCGGACTGGCTGCTGGAAGGCATCGGCCAACTGCTCGGGCGGATGCCCTCGGTGGCCAGCGTC
GAGCGCCATGACGAGTCGCGTACGCCGTTCCAGCGCCAGCTCGGCTGGCGACCCCCGCTCGACGATGCCTGC
CTGGTGGCGGCCGACCGGGTCTTCGTCAAGCATGGCTACCTGCCGACGGCGGAACTCGTCGACCATCTGCGT
GCGCTGCGAGCGGAACGGGTGCTGGTCTGCGGCATCCAGGCCGACACCTGCGTGCTCGCCGCCGGCTTCGCC
CTGTTCGACGCCGGCCTGCAACCGACCCTGGTCGGCGACCTGGTGCTCGGCTCCTCGCTGGATCGCTCGGGG
GAGCTGGGTGTGCGCCTGTGGAAGCATCATTTCGGCCAGGTCGTCAGCCTGGCCGAGGTGCTGGCGGATTGA
Translation:
MPGLFFRSRLPMRQALLIVDVQPCFAPPDWLLEGIGQLLGRMPSVASVERHDESRTPFQRQLGWRPPLDDAC
LVAADRVFVKHGYLPTAELVDHLRALRAERVLVCGIQADTCVLAAGFALFDAGLQPTLVGDLVLGSSLDRSG
ELGVRLWKHHFGQVVSLAEVLAD*
AnnotationID:4256GeneID:4250
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 07:07:33
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA3288
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1335,cd00431
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1335, PncA, Amidases related to nicotinamidase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 205 residues,  96.1% aligned
Score = 71.4 bits (174), Expect = 5e-14
Identities = 72/197 (36%), Positives = 81/197 (41%), Gaps = 41/197 (20%)

cd00431, Cysteine hydrolases
CD-Length = 161 residues,  93.8% aligned
Score = 61.1 bits (148), Expect = 6e-11







   
Genomic Context:






   
Comment:


















    ReferenceID:8501




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25643




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4250
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6546
                           PA3288_tr
                           translation of PA3288
                           167
                           99.40
                           99.99
                           0
                           870.0
     

     
     
177461
                           gb|AAG06676.1|AE004751_2
                           (AE004751) hypothetical protein PA3288 [Pseudomonas aeruginosa PAO1]
                           167
                           99.40
                           99.99
                           0
                           870.0
     

     
     
177462
                           gb|AAK87135.1|
                           (AE008060) AGR_C_2481p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           173
                           64.16
                           75.72
                           7
                           565.0
     

     
     
177463
                           gb|AAL42349.1|
                           (AE009096) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           167
                           64.07
                           74.25
                           11
                           555.0
     

     
     
177464
                           gb|AAN68171.1|AE016450_1
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           172
                           58.13
                           72.67
                           16
                           542.0
     

     






      

          
GC ORFID: 47252How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3288Glimmer Score: 

          
Start: 3087676Stop: 3087173

          
Length: 504


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3288 translation of PA3288Homolog Bit Score 339.0

          
Other Homologs:  t_PA3288 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGGCCTGTTCTTCCGGAGCCGACTACCGATGCGCCAGGCCCTGCTGATCGTCGACGTGCAACCCTGT 
TTCGCCCCGCCGGACTGGCTGCTGGAAGGCATCGGCCAACTGCTCGGGCGGATGCCCTCGGTGGCCAGCGTC 
GAGCGCCATGACGAGTCGCGTACGCCGTTCCAGCGCCAGCTCGGCTGGCGACCCCCGCTCGACGATGCCTGC 
CTGGTGGCGGCCGACCGGGTCTTCGTCAAGCATGGCTACCTGCCGACGGCGGAACTCGTCGACCATCTGCGT 
GCGCTGCGAGCGGAACGGGTGCTGGTCTGCGGCATCCAGGCCGACACCTGCGTGCTCGCCGCCGGCTTCGCC 
CTGTTCGACGCCGGCCTGCAACCGACCCTGGTCGGCGACCTGGTGCTCGGCTCCTCGCTGGATCGCTCGGGG 
GAGCTGGGTGTGCGCCTGTGGAAGCATCATTTCGGCCAGGTCGTCAGCCTGGCCGAGGTGCTGGCGGATTGA