ViewGene
Locus Name:
GeneID:
Location:

GeneID:4249
TrivialName: PA14_24100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24100
PAO1 Ortholog Locus:PA3095
Sequence Length:525
Protein Length:174
Start: 2091810
Stop: 2092334
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06483.1|AE004734_1 (AE004734) general secretion pathway protein M [Pseudomonas aeruginosa PAO1]
Identities = 174/174 (100%), Positives = 174/174 (100%)
Sequence:
ATGAAGGTGATGACGCAATTCCACGAGCGCCTCAGGGCCCAGGCGGAAACCTCGCAGCTGGCGATCCGCTGG
CGCGGGCTGCCGGCGCGGGACCGCCTGGCGCTGCTCTGGCTCGGTGCGTTCCTCCTGCTGGTGGTGCTCTAC
CTGGCGCTGTGGCGCCCGGCCGAGCGCCATCTGCAGTCGGCGCGGCAGTACTTCACCGAACAGCGCGCGCTG
CATGCCTACATCCAGCAGCAGGCGCCCAACGTGCGCCAGGCCGATGCCGCGGCGCCACAGGCGCAGATCGAC
CCGGCGGCGCTGCAGGGCATGGTCACGGCTTCGGCGGCCCAGGCCGGACTGAGTGTCGAGCGCCTCGACAAC
GAAGGCGAGGGCGCCGTGCAGGTGGCCCTGCAGCCGGCGCCATTCGCCAAGCTGCTGCCCTGGCTGGAGCAG
TTGAACGGGCAGGGCGTGCAGGTGGCGGAGGCCGGCCTGGACCGCCAGGTCGACGGCCGGGTCTCGGCGCGC
CTGAGCCTGCGGGTCGAGTGA
Translation:
MKVMTQFHERLRAQAETSQLAIRWRGLPARDRLALLWLGAFLLLVVLYLALWRPAERHLQSARQYFTEQRAL
HAYIQQQAPNVRQADAAAPQAQIDPAALQGMVTASAAQAGLSVERLDNEGEGAVQVALQPAPFAKLLPWLEQ
LNGQGVQVAEAGLDRQVDGRVSARLSLRVE*
AnnotationID:4255GeneID:4249
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 20:08:28
Gene Name:xcpZ
Confidence Code:1
GeneProduct:general secretion pathway protein M
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3149,pfam04612
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC83364.1| (AF092918) outer membrane secretion protein Z [Pseudomonas
           alcaligenes]
          Length = 170

 Score =  186 bits (472), Expect = 5e-47
 Identities = 97/161 (60%), Positives = 121/161 (75%), Gaps = 1/161 (0%)








 
Structural Features:
COG3149, PulM, Type II secretory pathway, component PulM 
[Intracellular trafficking and secretion]
CD-Length = 181 residues,  98.9% aligned
Score =  149 bits (378), Expect = 2e-37
Identities = 112/180 (62%), Positives = 127/180 (70%), Gaps = 8/180 (4%)

pfam04612, GspM, General secretion pathway, M protein.
CD-Length = 161 residues, 100.0% aligned
Score =  120 bits (303), Expect = 7e-29
Identities = 70/162 (43%), Positives = 94/162 (58%), Gaps = 5/162 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8499




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25641




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32429




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4249_cdd.html


    		




 
URL:

















    ReferenceID:33450




  
Author/Investigator(s):
        Robert V, Hayes F, Lazdunski A, Michel GP.





  
Title:
        Identification of XcpZ domains required for assembly of the secreton of Pseudomonas aeruginosa.




  
PubMed:
        11872731


MedLine:
        




    
Source:
J Bacteriol. 2002 Mar;184(6):1779-82.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11872731









           
Homologs By Global Alignment 

           

       



     
Gene ID:4249
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6545
                           PA3095_tr
                           translation of PA3095
                           174
                           99.99
                           99.99
                           0
                           870.0
     

     
     
177458
                           gb|AAG06483.1|AE004734_1
                           (AE004734) general secretion pathway protein M [Pseudomonas aeruginosa PAO1]
                           174
                           99.99
                           99.99
                           0
                           870.0
     

     
     
177459
                           emb|CAA39645.1|
                           (X56183) XcpZ protein [Pseudomonas aeruginosa]
                           174
                           99.99
                           99.99
                           0
                           870.0
     

     
     
177460
                           gb|AAC83364.1|
                           (AF092918) outer membrane secretion protein Z [Pseudomonas alcaligenes]
                           174
                           56.32
                           70.68
                           4
                           469.0
     

     






      

          
GC ORFID: 47251How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3095Glimmer Score: 

          
Start: 2862121Stop: 2861597

          
Length: 525


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3095 translation of PA3095Homolog Bit Score 339.0

          
Other Homologs:  t_PA3095 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGTGATGACGCAATTCCACGAGCGCCTCAGGGCCCAGGCGGAAACCTCGCAGCTGGCGATCCGCTGG 
CGCGGGCTGCCGGCGCGGGACCGCCTGGCGCTGCTCTGGCTCGGTGCGTTCCTCCTGCTGGTGGTGCTCTAC 
CTGGCGCTGTGGCGCCCGGCCGAGCGCCATCTGCAGTCGGCGCGGCAGTACTTCACCGAACAGCGCGCGCTG 
CATGCCTACATCCAGCAGCAGGCGCCCAACGTGCGCCAGGCCGATGCCGCGGCGCCACAGGCGCAGATCGAC 
CCGGCGGCGCTGCAGGGCATGGTCACGGCTTCGGCGGCCCAGGCCGGACTGAGTGTCGAGCGCCTCGACAAC 
GAAGGCGAGGGCGCCGTGCAGGTGGCCCTGCAGCCGGCGCCATTCGCCAAGCTGCTGCCCTGGCTGGAGCAG 
TTGAACGGGCAGGGCGTGCAGGTGGCGGAGGCCGGCCTGGACCGCCAGGTCGACGGCCGGGTCTCGGCGCGC 
CTGAGCCTGCGGGTCGAGTGA