ViewGene
Locus Name:
GeneID:
Location:

GeneID:4248
TrivialName: PA14_24500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24500
PAO1 Ortholog Locus:PA3062
Sequence Length:519
Protein Length:172
Start: 2141913
Stop: 2142431
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06450.1|AE004730_14 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 172/172 (100%), Positives = 172/172 (100%)
Sequence:
ATGCAATCCATCCGCTGCCTGGCTCTCGCGGCCGTCGCCCTGTTCATGGCGGGCTGCTCCAGCTTCACCAGC
GAAAGCGCTACGCCGCTGGCGCGCGGCGCGCAGTGGGGCCTGGTGCCGCTGCTCAATTACTCCCAGGCGCCG
CAGGCCGGCGAGCGTGCCGAGCAGATCCTGCTCAGCGTGCTGGCCGAGGAGGGTGTGCGGCCGCGCCTGTAC
CCGGCGCAGCCGCAAGGCGACCTGCAACTGGTCGACGACCGCGAGCGCCAGCAGCGCGCGCTGGACTGGGCA
CGCCAGCAGAAGCTGGCCTACGTGGTCACCGGCAGCGTCGAGGAGTGGCAGTACAAGAACGGCCTCGACGGC
GAGCCGGCGGTGGGCGTCAGCCTGCAGGTGCTGGAGCCGGCCTCCGGGCGGGTGCTCTGGAGCACCAGCGGG
GCGCGCGCCGGCTGGTCCCGGGAAAGCCTGGCGGGCGCCGCGCAGAAAGTCCTGCGCGAGCTGGTCGGCGAC
CTGCGGCTCGAGTGA
Translation:
MQSIRCLALAAVALFMAGCSSFTSESATPLARGAQWGLVPLLNYSQAPQAGERAEQILLSVLAEEGVRPRLY
PAQPQGDLQLVDDRERQQRALDWARQQKLAYVVTGSVEEWQYKNGLDGEPAVGVSLQVLEPASGRVLWSTSG
ARAGWSRESLAGAAQKVLRELVGDLRLE*
AnnotationID:4254GeneID:4248
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 12:12:21
Gene Name:pelC
Confidence Code:4
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA3062
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD15981.1| (AL646069) PUTATIVE LIPOPROTEIN [Ralstonia solanacearum]
          Length = 186

 Score =  139 bits (351), Expect = 6e-33
 Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 5/170 (2%)







 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:
Part of pelABCDEFG cluster involved in biofilm matrix formation in P. aeruginosa PA14 and ZK2870






   
Comment:


















    ReferenceID:8497




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25639




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4248
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6544
                           PA3062_tr
                           translation of PA3062
                           172
                           99.99
                           99.99
                           0
                           870.0
     

     
     
177456
                           gb|AAG06450.1|AE004730_14
                           (AE004730) hypothetical protein PA3062 [Pseudomonas aeruginosa PAO1]
                           172
                           99.99
                           99.99
                           0
                           870.0
     

     
     
177457
                           emb|CAD15981.1|
                           (AL646069) PUTATIVE LIPOPROTEIN [Ralstonia solanacearum]
                           187
                           40.64
                           60.42
                           16
                           351.0
     

     






      

          
GC ORFID: 47250How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3062Glimmer Score: 

          
Start: 2812016Stop: 2811498

          
Length: 519


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3062 translation of PA3062Homolog Bit Score 339.0

          
Other Homologs:  t_PA3062 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATCCATCCGCTGCCTGGCTCTCGCGGCCGTCGCCCTGTTCATGGCGGGCTGCTCCAGCTTCACCAGC 
GAAAGCGCTACGCCGCTGGCGCGCGGCGCGCAGTGGGGCCTGGTGCCGCTGCTCAATTACTCCCAGGCGCCG 
CAGGCCGGCGAGCGTGCCGAGCAGATCCTGCTCAGCGTGCTGGCCGAGGAGGGTGTGCGGCCGCGCCTGTAC 
CCGGCGCAGCCGCAAGGCGACCTGCAACTGGTCGACGACCGCGAGCGCCAGCAGCGCGCGCTGGACTGGGCA 
CGCCAGCAGAAGCTGGCCTACGTGGTCACCGGCAGCGTCGAGGAGTGGCAGTACAAGAACGGCCTCGACGGC 
GAGCCGGCGGTGGGCGTCAGCCTGCAGGTGCTGGAGCCGGCCTCCGGGCGGGTGCTCTGGAGCACCAGCGGG 
GCGCGCGCCGGCTGGTCCCGGGAAAGCCTGGCGGGCGCCGCGCAGAAAGTCCTGCGCGAGCTGGTCGGCGAC 
CTGCGGCTCGAGTGA