ViewGene
Locus Name:
GeneID:
Location:

GeneID:4247
TrivialName: PA14_26850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26850
PAO1 Ortholog Locus:PA2880
Sequence Length:516
Protein Length:171
Start: 2336540
Stop: 2336025
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06268.1|AE004714_5 (AE004714) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 169/171 (98%), Positives = 170/171 (99%)
Sequence:
ATGACAATACAGCCCGACTTCAACGACGAACCGGGAGCGTTCGCCATGACCCACACCCACACCGCCCTCGAC
AAGACTCTCAAGGAGCGGGTCTTCCACGCCCTGGCCTTCGAGGGCCTGGCCGTCCTCCTCACCGCGCCGGTG
CTGTCGCTGGTGATGAACAAGCCCCTGGCGCACATGGGTGCGCTGACGCTGATGTTCTCCACCGTGGCGATG
CTCTGGAACATGCTTTTCAACAGCCTCTTCGACCGCGCCCAGCGGCGCATGGGCTTCCAGCGCACCCTGCAG
GTCCGGGTGCTGCATGCGATGCTCTTCGAGCTGGGGCTGATCGTGGTGCTGGTACCGCTGGCCGCCTGGTGG
CTGTCGATCGGACTGGTCGAGGCGTTCCTCCTCGACATGGGCCTGATCCTGTTCTTCCTGCCCTACACCATG
GCCTTCAACTGGAGCTACGACGTACTCCGCGCACGCCTGGTGGAAAGCCGCCAGACCAAGGCCGCCGGTTGC
GACGCCGGCTAG
Translation:
MTIQPDFNDEPGAFAMTHTHTALDKTLKERVFHALAFEGLAVLLTAPVLSLVMNKPLAHMGALTLMFSTVAM
LWNMLFNSLFDRAQRRMGFQRTLQVRVLHAMLFELGLIVVLVPLAAWWLSIGLVEAFLLDMGLILFFLPYTM
AFNWSYDVLRARLVESRQTKAAGCDAG*
AnnotationID:4253GeneID:4247
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 08:08:24
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2880
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05232
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE34630.1| (BX640450) putative membrane protein [Bordetella bronchiseptica]
          Length = 151

 Score =  155 bits (391), Expect = 1e-37
 Identities = 72/141 (51%), Positives = 104/141 (73%)

>gb|AAL21897.1| (AE008839) putative inner membrane protein [Salmonella typhimurium
           LT2]
          Length = 160

 Score =  150 bits (379), Expect = 3e-36
 Identities = 69/148 (46%), Positives = 104/148 (70%), Gaps = 1/148 (0%)








 
Structural Features:
pfam05232, BTP, Bacterial Transmembrane Pair family
CD-Length = 68 residues, 100.0% aligned
Score = 78.3 bits (193), Expect = 4e-16
Identities = 32/68 (47%), Positives = 43/68 (63%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8495




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25637




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36169




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4247_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4247
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6543
                           PA2880_tr
                           translation of PA2880
                           171
                           98.83
                           99.41
                           0
                           869.0
     

     
     
177440
                           gb|AAG06268.1|AE004714_5
                           (AE004714) hypothetical protein PA2880 [Pseudomonas aeruginosa PAO1]
                           171
                           98.83
                           99.41
                           0
                           869.0
     

     
     
177441
                           gb|AAO57061.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           178
                           48.87
                           65.73
                           16
                           445.0
     

     
     
177442
                           gb|AAQ60351.1|
                           (AE016919) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           171
                           47.36
                           61.40
                           22
                           410.0
     

     
     
177443
                           emb|CAD18664.1|
                           (AL646085) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           171
                           47.36
                           61.98
                           26
                           403.0
     

     






      

          
GC ORFID: 47249How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2880Glimmer Score: 

          
Start: 2617386Stop: 2617901

          
Length: 516


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2880 translation of PA2880Homolog Bit Score 339.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8184 (ORF: BLASTX 180.0), t_PA2880 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAATACAGCCCGACTTCAACGACGAACCGGGAGCGTTCGCCATGACCCACACCCACACCGCCCTCGAC 
AAGACTCTCAAGGAGCGGGTCTTCCACGCCCTGGCCTTCGAGGGCCTGGCCGTCCTCCTCACCGCGCCGGTG 
CTGTCGCTGGTGATGAACAAGCCCCTGGCGCACATGGGTGCGCTGACGCTGATGTTCTCCACCGTGGCGATG 
CTCTGGAACATGCTTTTCAACAGCCTCTTCGACCGCGCCCAGCGGCGCATGGGCTTCCAGCGCACCCTGCAG 
GTCCGGGTGCTGCATGCGATGCTCTTCGAGCTGGGGCTGATCGTGGTGCTGGTACCGCTGGCCGCCTGGTGG 
CTGTCGATCGGACTGGTCGAGGCGTTCCTCCTCGACATGGGCCTGATCCTGTTCTTCCTGCCCTACACCATG 
GCCTTCAACTGGAGCTACGACGTACTCCGCGCACGCCTGGTGGAAAGCCGCCAGACCAAGGCCGCCGGTTGC 
GACGCCGGCTAG