ViewGene
Locus Name:
GeneID:
Location:

GeneID:4245
TrivialName: PA14_47120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47120
PAO1 Ortholog Locus:PA1324
Sequence Length:513
Protein Length:170
Start: 4198748
Stop: 4198236
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04713.1|AE004561_9 (AE004561) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 168/170 (98%), Positives = 168/170 (98%)
Sequence:
ATGCTTTCGATCAAGAAGAACCTCGGCCTCCTGGCCATGACCGTGGCCCTGGCGGCCTGCGCCTCCAACCCC
AACGACCTGCCGGATTTCCCGGAGCATGAATACGCGGCGACCCAGCAGGTGGGCGAGGGCGTGATCAACGGC
GACCTGTACCTGACCAGCGCGTCGGGTGCGATCCAGAAGGGGACCAACACCAAGGTCACCCTGGAGCCTGCG
ACCAGCTACATGAAGGCCTACTACGCGAAGTTCGGCAACCTCGATGCCGCCAAGCGCGATCCCGACGTGCAA
CCGCCGGTGCTCGACCCGCGACGCGCCACCTACGTGCGCGAGGCGACCACCGACCAGAACGGTCGCTTCGAC
TTCGACCACATCCCCAACGGCACCTATTACATTTCCAGCGAACTGACCTGGAGCGCCCAGAGCGATGGCAAG
ACCATCACCGAGGGGGGCACCGTCACCAAGCTGGTCACCGTAAGTGGCTCGCAGCCGCAGAAGGTGCTGCTG
ACCCGCTGA
Translation:
MLSIKKNLGLLAMTVALAACASNPNDLPDFPEHEYAATQQVGEGVINGDLYLTSASGAIQKGTNTKVTLEPA
TSYMKAYYAKFGNLDAAKRDPDVQPPVLDPRRATYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGK
TITEGGTVTKLVTVSGSQPQKVLLTR*
AnnotationID:4251GeneID:4245
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 06:06:54
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1324
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8491




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25633




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4245
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6541
                           PA1324_tr
                           translation of PA1324
                           170
                           98.82
                           98.82
                           0
                           869.0
     

     
     
177410
                           gb|AAG04713.1|AE004561_9
                           (AE004561) hypothetical protein PA1324 [Pseudomonas aeruginosa PAO1]
                           170
                           98.82
                           98.82
                           0
                           869.0
     

     






      

          
GC ORFID: 47247How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1324Glimmer Score: 

          
Start: 755161Stop: 755673

          
Length: 513


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1324 translation of PA1324Homolog Bit Score 339.0

          
Other Homologs:  t_PA1324 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTTCGATCAAGAAGAACCTCGGCCTCCTGGCCATGACCGTGGCCCTGGCGGCCTGCGCCTCCAACCCC 
AACGACCTGCCGGATTTCCCGGAGCATGAATACGCGGCGACCCAGCAGGTGGGCGAGGGCGTGATCAACGGC 
GACCTGTACCTGACCAGCGCGTCGGGTGCGATCCAGAAGGGGACCAACACCAAGGTCACCCTGGAGCCTGCG 
ACCAGCTACATGAAGGCCTACTACGCGAAGTTCGGCAACCTCGATGCCGCCAAGCGCGATCCCGACGTGCAA 
CCGCCGGTGCTCGACCCGCGACGCGCCACCTACGTGCGCGAGGCGACCACCGACCAGAACGGTCGCTTCGAC 
TTCGACCACATCCCCAACGGCACCTATTACATTTCCAGCGAACTGACCTGGAGCGCCCAGAGCGATGGCAAG 
ACCATCACCGAGGGGGGCACCGTCACCAAGCTGGTCACCGTAAGTGGCTCGCAGCCGCAGAAGGTGCTGCTG 
ACCCGCTGA