ViewGene
Locus Name:
GeneID:
Location:

GeneID:4244
TrivialName: PA14_49220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49220
PAO1 Ortholog Locus:PA1176
Sequence Length:492
Protein Length:163
Start: 4372405
Stop: 4372896
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04565.1|AE004547_11 (AE004547) ferredoxin protein NapF [Pseudomonas aeruginosa PAO1]
Identities = 159/163 (97%), Positives = 160/163 (98%)
Sequence:
ATGAGCAGTCGCCGAGAGCTGTTCCGCCGCCTCGGCGGGCACCCGCCGACGCGGCGCCCGCCGTGGACCGCC
GCCGACTTCGCCGAAGGCTGCACAGGCTGCGCCGCCTGCGTCGAGGCCTGCCCGGAAGGCGTGCTGAAGCTC
GGCGCCGGTCGGCTCGTCGAACTCGACCTCTCCAGCGCCGGCTGCACGCTGTGCGGGGAATGCGCCAGCCGC
TGCGAGGCCGGCCTGTTCGATGGCGCGCGCCCGGCCTTCCCCTGGATCGCCACGATCGGCGAAGCCTGCCTG
GCCCTGGCCGGGATCCACTGCCGCAGTTGCCAGGACGCCTGCGAACCCGCCGCGATCCGTTTCCGCCCGGCT
CCCGGCGGCGTCGCCCTGGCCGAGCTGGACAGCCAGCGCTGCAACGGCTGCGGCGCCTGCCTGGCGCCCTGT
CCGAGCCAGGCCATCCAACTGCGTGCGCTATCCAACGAGGAGTCTCCACGACATGCCTGA
Translation:
MSSRRELFRRLGGHPPTRRPPWTAADFAEGCTGCAACVEACPEGVLKLGAGRLVELDLSSAGCTLCGECASR
CEAGLFDGARPAFPWIATIGEACLALAGIHCRSCQDACEPAAIRFRPAPGGVALAELDSQRCNGCGACLAPC
PSQAIQLRALSNEESPRHA*
AnnotationID:4250GeneID:4244
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 14:02:25
Gene Name:napF
Confidence Code:2
GeneProduct:ferredoxin protein NapF
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1146
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Nitrogen metabolism
Homology:






 
Structural Features:






   
Genomic Context:
Second of six ORF cluster: napEFDABC.






   
Comment:


















    ReferenceID:8489




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16967




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search






    
Reference Type:Blast (text/plain)







    
Data:napF_CDS.cgi


    		




 
URL:

















    ReferenceID:25631




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4244
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6540
                           PA1176_tr
                           translation of PA1176
                           163
                           97.54
                           98.15
                           0
                           870.0
     

     
     
177385
                           gb|AAG04565.1|AE004547_11
                           (AE004547) ferredoxin protein NapF [Pseudomonas aeruginosa PAO1]
                           163
                           97.54
                           98.15
                           0
                           870.0
     

     
     
177386
                           dbj|BAA31959.1|
                           (AB016290) iron-sulfur protein containing four [4Fe-4S] clusters [Rhodobacter sphaeroides f. sp. denitrificans]
                           166
                           48.79
                           60.24
                           9
                           391.0
     

     
     
177387
                           gb|AAC23520.1|
                           (AF069545) NapF [Rhodobacter sphaeroides f. sp. denitrificans]
                           166
                           48.79
                           60.24
                           9
                           390.0
     

     
     
177388
                           emb|CAA86832.1|
                           (Z46806) NapF [Rhodobacter sphaeroides]
                           166
                           47.59
                           59.03
                           9
                           383.0
     

     






      

          
GC ORFID: 47246How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1176Glimmer Score: 

          
Start: 581503Stop: 581012

          
Length: 492


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1176 translation of PA1176Homolog Bit Score 339.0

          
Other Homologs:  t_PA1176 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAGTCGCCGAGAGCTGTTCCGCCGCCTCGGCGGGCACCCGCCGACGCGGCGCCCGCCGTGGACCGCC 
GCCGACTTCGCCGAAGGCTGCACAGGCTGCGCCGCCTGCGTCGAGGCCTGCCCGGAAGGCGTGCTGAAGCTC 
GGCGCCGGTCGGCTCGTCGAACTCGACCTCTCCAGCGCCGGCTGCACGCTGTGCGGGGAATGCGCCAGCCGC 
TGCGAGGCCGGCCTGTTCGATGGCGCGCGCCCGGCCTTCCCCTGGATCGCCACGATCGGCGAAGCCTGCCTG 
GCCCTGGCCGGGATCCACTGCCGCAGTTGCCAGGACGCCTGCGAACCCGCCGCGATCCGTTTCCGCCCGGCT 
CCCGGCGGCGTCGCCCTGGCCGAGCTGGACAGCCAGCGCTGCAACGGCTGCGGCGCCTGCCTGGCGCCCTGT 
CCGAGCCAGGCCATCCAACTGCGTGCGCTATCCAACGAGGAGTCTCCACGACATGCCTGA