ViewGene

Locus Name:
GeneID:
Location:

GeneID:4243
TrivialName: PA14_59020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59020
PAO1 Ortholog Locus:
Sequence Length:495
Protein Length:164
Start: 5258410
Stop: 5258904
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84231.1| (AY273869) hypothetical protein RL106 [Pseudomonas aeruginosa]
Identities = 164/164 (100%), Positives = 164/164 (100%)
Sequence:
ATGCCTGACGTCACAGCCTACCGGCCGCTCGAGCACTTCCAGAAAGTCGAGCTGATGCTTGAGCTCAAGTTG
CGTGAAGGTCCTTCGTGGATCTGTCTGAACTGCGGCTATCACCTGGATGGCAGCGGCGCACAGCCCTGCCCT
GACTGCGGAAAGTCGCGCTACTGGACCAGCGGTTGGAGTGTAGGTCGTGGCCATCGCTTCTCGGCAGCAAGG
GAAGAGTGGGAAAACCGCCTCAGGACACGGTCGCGGTCACCTGTCGCGTCAACGGCACCAGTAGCAACTGAC
GACGTATGCACTCAACTGCGCACAGAGGTCCGCATGCTGCGTTCCGCGCATGACGACCTGGCCTGCAGCCGG
CAGAGCGATCGTCGCAGCCTTCAGGCGCTGGTGAAACGTCTCCTGGATGCCGCCGCCACCGATAGCCTTCCC
CGCTCCCTTGCAGAGATGGAGACCTGGCTGCAGCTCAACAGCGAGGAGACCACGAATGCGTAG
Translation:
MPDVTAYRPLEHFQKVELMLELKLREGPSWICLNCGYHLDGSGAQPCPDCGKSRYWTSGWSVGRGHRFSAAR
EEWENRLRTRSRSPVASTAPVATDDVCTQLRTEVRMLRSAHDDLACSRQSDRRSLQALVKRLLDAAATDSLP
RSLAEMETWLQLNSEETTNA*
AnnotationID:4249GeneID:4243
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 23:11:36
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8487
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25629
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4243

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
177384 gb|AAP84231.1| (AY273869) hypothetical protein RL106 [Pseudomonas aeruginosa] 164 99.99 99.99 0 873.0
GC ORFID: 47245How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL106Glimmer Score:
Start: 4522089Stop: 4522583
Length: 495
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_RL106 164 Homolog: No significant similarity () translation of RL106Homolog Bit Score 340.0
Other Homologs:
GC ORF Sequence
ATGCCTGACGTCACAGCCTACCGGCCGCTCGAGCACTTCCAGAAAGTCGAGCTGATGCTTGAGCTCAAGTTG
CGTGAAGGTCCTTCGTGGATCTGTCTGAACTGCGGCTATCACCTGGATGGCAGCGGCGCACAGCCCTGCCCT
GACTGCGGAAAGTCGCGCTACTGGACCAGCGGTTGGAGTGTAGGTCGTGGCCATCGCTTCTCGGCAGCAAGG
GAAGAGTGGGAAAACCGCCTCAGGACACGGTCGCGGTCACCTGTCGCGTCAACGGCACCAGTAGCAACTGAC
GACGTATGCACTCAACTGCGCACAGAGGTCCGCATGCTGCGTTCCGCGCATGACGACCTGGCCTGCAGCCGG
CAGAGCGATCGTCGCAGCCTTCAGGCGCTGGTGAAACGTCTCCTGGATGCCGCCGCCACCGATAGCCTTCCC
CGCTCCCTTGCAGAGATGGAGACCTGGCTGCAGCTCAACAGCGAGGAGACCACGAATGCGTAG