ViewGene

Locus Name:
GeneID:
Location:

GeneID:4242
TrivialName: PA14_07360
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07360
PAO1 Ortholog Locus:PA0566
Sequence Length:516
Protein Length:171
Start: 632513
Stop: 631998
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03955.1|AE004492_14 (AE004492) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 169/171 (98%), Positives = 169/171 (98%)
Sequence:
ATGTCCGACCTGCCCCCGCGTCCCGCCTTCTGGCCGTACCTGCCGGGCTACGCCCTGTTGCTGCTTTCGGTG
CTGCTCTGCGCCAGCGGCAGCTACCGTTTCGTCACCCCGATGGCGCTCGCCGACGGCGTCGACCTGGTCTAC
CTCAGCCAGGGCCTGGCGCTGCTACCGCTGGGTACCGGGCTGGTCGGCCTGCTCGCGGGCTTCCTCCTGCAT
GTCCGCGGGCGCTGGCTCGGCGCGCTGCTGGCGCTGCTGCCGGCGACGCTGATCTGCGCCTGGAACCTGTAC
AACTATGCCGCCCACGGCGACGAGGCGTTGTCGCCGAGTTTCGCCCAGTACACCCAGGCGCTGCTCGGCCTG
CTGCTGCTCGGCGGCGTGCTGAGCCTGGTCGACCTGCTCCACGGCAGGCCCTCGACGCTGCTGCGCAAGGGC
CTGCTGGGGCTGGGCTGGCTGGCCCTGGTGGCCTGGCTGGGGTTGCTGTTCTACCTGCAGCGCCTGTACGGC
CTCACTTTTTGA
Translation:
MSDLPPRPAFWPYLPGYALLLLSVLLCASGSYRFVTPMALADGVDLVYLSQGLALLPLGTGLVGLLAGFLLH
VRGRWLGALLALLPATLICAWNLYNYAAHGDEALSPSFAQYTQALLGLLLLGGVLSLVDLLHGRPSTLLRKG
LLGLGWLALVAWLGLLFYLQRLYGLTF*
AnnotationID:4248GeneID:4242
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:19
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0566
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8485
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25627
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4242

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6539 PA0566_tr translation of PA0566 171 98.83 98.83 0 872.0
177383 gb|AAG03955.1|AE004492_14 (AE004492) hypothetical protein PA0566 [Pseudomonas aeruginosa PAO1] 171 98.83 98.83 0 872.0
GC ORFID: 47244How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0566Glimmer Score:
Start: 6433856Stop: 6433341
Length: 516
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0566 translation of PA0566Homolog Bit Score 340.0
Other Homologs: t_PA0566 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGACCTGCCCCCGCGTCCCGCCTTCTGGCCGTACCTGCCGGGCTACGCCCTGTTGCTGCTTTCGGTG
CTGCTCTGCGCCAGCGGCAGCTACCGTTTCGTCACCCCGATGGCGCTCGCCGACGGCGTCGACCTGGTCTAC
CTCAGCCAGGGCCTGGCGCTGCTACCGCTGGGTACCGGGCTGGTCGGCCTGCTCGCGGGCTTCCTCCTGCAT
GTCCGCGGGCGCTGGCTCGGCGCGCTGCTGGCGCTGCTGCCGGCGACGCTGATCTGCGCCTGGAACCTGTAC
AACTATGCCGCCCACGGCGACGAGGCGTTGTCGCCGAGTTTCGCCCAGTACACCCAGGCGCTGCTCGGCCTG
CTGCTGCTCGGCGGCGTGCTGAGCCTGGTCGACCTGCTCCACGGCAGGCCCTCGACGCTGCTGCGCAAGGGC
CTGCTGGGGCTGGGCTGGCTGGCCCTGGTGGCCTGGCTGGGGTTGCTGTTCTACCTGCAGCGCCTGTACGGC
CTCACTTTTTGA