ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4239

TrivialName: PA14_40330

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_40330

PAO1 Ortholog Locus: PA1867

Sequence Length: 528

Protein Length: 175

Start: 3604715

Stop: 3604188

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05256.1|AE004613_1 (AE004613) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 175/175 (100%), Positives = 175/175 (100%)

Sequence:

ATGCAGCGCGCCCGTTTGCCGGAATCCGCCTGCTGCATGTCGCGTCACCTTCCATCGTCTTTCGTTTCCCTG
CGCAGCCTGGCCGGGCATGCGCCCGCTGTGCTTTGCGTGCTGCTGCTGGCGTTGCTCAGCGCCAGCCTGGCC
AGCCAGACGCGCTCGCTGCGCCGCGAGCTGGCGGAATTGCCCGCCGCAGCGGCCCCGGCGCCGCCAGCCAAC
CCTTCAGCGGCCCCGCGCGCGGCGTTAGCCGGCTTGTTCGGTGGCGCTCCGTCGCCGCGCGGCGCGACGGCG
GGCGAGCGTCTGCAATTACGCCTGCTGGCCTGCTTCCTGGCGCGTCGCGAGGACCGCTCGGCGGCGCTGATC
GCGGTGGCCGGGCGCTCGCAGCGCTTCCTGCCGGGCGCCGAAGTGCGCCCCGGCACCGTGCTGCTGGCGGTT
CATCGCGACCATGTGGTGCTGCGCGACCAGGGTTATGAAGAACGTCTGTATTTCCCCAAAGCCGAAGGGGCA
GAAACCACCCATGCCACGTTGTAG

Translation:

MQRARLPESACCMSRHLPSSFVSLRSLAGHAPAVLCVLLLALLSASLASQTRSLRRELAELPAAAAPAPPAN
PSAAPRAALAGLFGGAPSPRGATAGERLQLRLLACFLARREDRSAALIAVAGRSQRFLPGAEVRPGTVLLAV
HRDHVVLRDQGYEERLYFPKAEGAETTHATL*

AnnotationID:4245 GeneID:4239

AnnotatorUID: diggins

Modification Date/Time: 2005-03-02 07:07:38

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA1867

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

Other possible gene name: xphA

ReferenceID:8479

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25621

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37047

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4239_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4239

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6535 PA1867_tr translation of PA1867 175 99.99 99.99 0 872.0

177345 gb|AAG05256.1|AE004613_1 (AE004613) hypothetical protein PA1867 [Pseudomonas aeruginosa PAO1] 175 99.99 99.99 0 872.0

GC ORFID: `47241`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1867`	Glimmer Score:
Start: `1349195`	Stop: `1349722`
Length: `528`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA1867 translation of PA1867`	Homolog Bit Score `340.0`
Other Homologs: `t_PA1867 (ORF: GLIMMER)`
GC ORF Sequence
ATGCAGCGCGCCCGTTTGCCGGAATCCGCCTGCTGCATGTCGCGTCACCTTCCATCGTCTTTCGTTTCCCTG CGCAGCCTGGCCGGGCATGCGCCCGCTGTGCTTTGCGTGCTGCTGCTGGCGTTGCTCAGCGCCAGCCTGGCC AGCCAGACGCGCTCGCTGCGCCGCGAGCTGGCGGAATTGCCCGCCGCAGCGGCCCCGGCGCCGCCAGCCAAC CCTTCAGCGGCCCCGCGCGCGGCGTTAGCCGGCTTGTTCGGTGGCGCTCCGTCGCCGCGCGGCGCGACGGCG GGCGAGCGTCTGCAATTACGCCTGCTGGCCTGCTTCCTGGCGCGTCGCGAGGACCGCTCGGCGGCGCTGATC GCGGTGGCCGGGCGCTCGCAGCGCTTCCTGCCGGGCGCCGAAGTGCGCCCCGGCACCGTGCTGCTGGCGGTT CATCGCGACCATGTGGTGCTGCGCGACCAGGGTTATGAAGAACGTCTGTATTTCCCCAAAGCCGAAGGGGCA GAAACCACCCATGCCACGTTGTAG