ViewGene
Locus Name:
GeneID:
Location:

GeneID:4238
TrivialName: PA14_41970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41970
PAO1 Ortholog Locus:PA1746
Sequence Length:507
Protein Length:168
Start: 3746266
Stop: 3745760
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05135.1|AE004600_11 (AE004600) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 168/168 (100%), Positives = 168/168 (100%)
Sequence:
ATGATTCGTGAAGTTGAAGGTGACATTCTGCTTTCCGGGGCCCAGGTGATCGCCCACGGCATCGCGCCCCAG
GACCATTTCGACAGCGGCCTGGCCCTCGCCTTGCGCGAACGCTGGCCGTCGATGGTTCGCGACTACCGGCAT
GCCGCCCATGCCAGGGCGCCCGAGCCGGGCGGCATCTGGGTCTGGGCCGGGGTCGACGAGCAGGGCAAGACC
CAGTGCATCGTCAACCTGATCACCCAGGGCATGCTGCACAGCGGTCGTAGCGCCAAGCCGGGCAAGGCGAGC
CTGGAGGATGTCGGCCATGCCCTGCGCGAGCTGGCCCGCTATGTGCGCAGCGAAGGGGTGAGCAGCCTGGCT
CTGCCCTGCGTGGCGACGGGAGTGGGCGGGCTGGACTGGTCCGAGGTCAAGCCGCTGGTGGTTCGCCACCTG
GGCGACCTGGAGATCCCGGTGATTCTCTACGAGGTCTATCGCAAGGGCGTGGCGGCCGAGGAAAAGCTGGCC
TGA
Translation:
MIREVEGDILLSGAQVIAHGIAPQDHFDSGLALALRERWPSMVRDYRHAAHARAPEPGGIWVWAGVDEQGKT
QCIVNLITQGMLHSGRSAKPGKASLEDVGHALRELARYVRSEGVSSLALPCVATGVGGLDWSEVKPLVVRHL
GDLEIPVILYEVYRKGVAAEEKLA*
AnnotationID:4244GeneID:4238
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 09:09:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1745
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8477




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25619




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37153




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4238_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4238
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6534
                           PA1746_tr
                           translation of PA1746
                           168
                           99.99
                           99.99
                           0
                           872.0
     

     
     
177344
                           gb|AAG05135.1|AE004600_11
                           (AE004600) hypothetical protein PA1746 [Pseudomonas aeruginosa PAO1]
                           168
                           99.99
                           99.99
                           0
                           872.0
     

     






      

          
GC ORFID: 47240How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1746Glimmer Score: 

          
Start: 1207643Stop: 1208149

          
Length: 507


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1746 translation of PA1746Homolog Bit Score 340.0

          
Other Homologs:  t_PA1746 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTCGTGAAGTTGAAGGTGACATTCTGCTTTCCGGGGCCCAGGTGATCGCCCACGGCATCGCGCCCCAG 
GACCATTTCGACAGCGGCCTGGCCCTCGCCTTGCGCGAACGCTGGCCGTCGATGGTTCGCGACTACCGGCAT 
GCCGCCCATGCCAGGGCGCCCGAGCCGGGCGGCATCTGGGTCTGGGCCGGGGTCGACGAGCAGGGCAAGACC 
CAGTGCATCGTCAACCTGATCACCCAGGGCATGCTGCACAGCGGTCGTAGCGCCAAGCCGGGCAAGGCGAGC 
CTGGAGGATGTCGGCCATGCCCTGCGCGAGCTGGCCCGCTATGTGCGCAGCGAAGGGGTGAGCAGCCTGGCT 
CTGCCCTGCGTGGCGACGGGAGTGGGCGGGCTGGACTGGTCCGAGGTCAAGCCGCTGGTGGTTCGCCACCTG 
GGCGACCTGGAGATCCCGGTGATTCTCTACGAGGTCTATCGCAAGGGCGTGGCGGCCGAGGAAAAGCTGGCC 
TGA