ViewGene
Locus Name:
GeneID:
Location:

GeneID:4237
TrivialName: PA14_51800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51800
PAO1 Ortholog Locus:PA0965
Sequence Length:525
Protein Length:174
Start: 4600403
Stop: 4599879
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04354.1|AE004530_7 (AE004530) Holliday junction resolvase RuvC [Pseudomonas aeruginosa PAO1]
Identities = 174/174 (100%), Positives = 174/174 (100%)
Sequence:
ATGACTTTGATTCTAGGGATTGACCCGGGCTCGCGCATCACCGGCTTCGGCGTGGTGCGGGAAACGGCGCGC
GGTTGCGAATACGTGGCGTCCGGATGCATACGGACCGGTAATGGCCCCTTGCACGAGCGTCTGCACGTGGTG
TTTCGCAGCGTCCGCGAGGTGATCCGCACCCACGGCCCGACGGCCCTGAGCATCGAGCAGGTGTTCATGGCG
CGCAACGCCGATTCGGCCCTGAAGCTGGGGCAGGCGCGGGGGGCGGCCATCGTCGCGGCAATGGAGGAGGGG
TTGAGCGTGGCGGAGTACACCGCCTCGCAGGTCAAGCAGGCAGTCGTGGGGACCGGCGGTGCAGACAAGCAG
CAGGTGCAGATGATGGTCATGCATCTGTTGAAGCTGACCCAGAAACCGCAGATCGATGCCTCCGACGCCCTG
GCCATCGCCCTGTGTCATGCCCATACCCAACAGAGTCTGGTCCCCCATGGCCTGGTGGGCGCACGCCGACGT
GGCGGGCGCCTGCGTCTTTGA
Translation:
MTLILGIDPGSRITGFGVVRETARGCEYVASGCIRTGNGPLHERLHVVFRSVREVIRTHGPTALSIEQVFMA
RNADSALKLGQARGAAIVAAMEEGLSVAEYTASQVKQAVVGTGGADKQQVQMMVMHLLKLTQKPQIDASDAL
AIALCHAHTQQSLVPHGLVGARRRGGRLRL*
AnnotationID:4243GeneID:4237
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 12:12:06
Gene Name:ruvC
Confidence Code:1
GeneProduct:Holliday junction resolvase RuvC
Cell Localization:()
Synonyms:PA0965
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:crossover junction endodeoxyribonuclease RuvC 
Functional Category Confidence Code:5
COGs:COG0817, pfam02075, cd00529
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0817, RuvC, Holliday junction resolvasome, endonuclease subunit. Score: 201, 5e-53
pfam02075, RuvC, Crossover junction endodeoxyribonuclease RuvC. Score: 199, 1e-52
cd00529, RuvC_resolvase. Score: 195, 2e-51






   
Genomic Context:
operon:orf26, ruvCAB 






   
Comment:


















    ReferenceID:8475




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25617




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32059




  
Author/Investigator(s):
        Hishida T, Iwasaki H, Ishioka K, Shinagawa H.





  
Title:
        Molecular analysis of the Pseudomonas aeruginosa genes, ruvA, ruvB and ruvC, involved in processing of homologous recombination intermediates.




  
PubMed:
        97136691


MedLine:
        




    
Source:
Gene. 1996 Dec 5;182(1-2):63-70.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4237
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6533
                           PA0965_tr
                           translation of PA0965
                           174
                           99.99
                           99.99
                           0
                           873.0
     

     
     
177292
                           gb|AAG04354.1|AE004530_7
                           (AE004530) Holliday junction resolvase RuvC [Pseudomonas aeruginosa PAO1]
                           174
                           99.99
                           99.99
                           0
                           873.0
     

     
     
177293
                           dbj|BAA11817.1|
                           (D83138) Holliday junction specific endonuclease [Pseudomonas aeruginosa]
                           174
                           99.99
                           99.99
                           0
                           873.0
     

     
     
177294
                           gb|AAN66839.1|AE016312_10
                           (AE016778) crossover junction endodeoxyribonuclease RuvC [Pseudomonas putida KT2440]
                           174
                           82.75
                           90.22
                           0
                           741.0
     

     
     
177295
                           gb|AAO57438.1|
                           (AE016870) crossover junction endodeoxyribonuclease RuvC [Pseudomonas syringae pv. tomato str. DC3000]
                           176
                           80.11
                           88.63
                           2
                           716.0
     

     






      

          
GC ORFID: 47239How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0965Glimmer Score: 

          
Start: 353504Stop: 354028

          
Length: 525


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0965 translation of PA0965Homolog Bit Score 340.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4685 (ORF: BLASTX 281.0), t_PA0965 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTTTGATTCTAGGGATTGACCCGGGCTCGCGCATCACCGGCTTCGGCGTGGTGCGGGAAACGGCGCGC 
GGTTGCGAATACGTGGCGTCCGGATGCATACGGACCGGTAATGGCCCCTTGCACGAGCGTCTGCACGTGGTG 
TTTCGCAGCGTCCGCGAGGTGATCCGCACCCACGGCCCGACGGCCCTGAGCATCGAGCAGGTGTTCATGGCG 
CGCAACGCCGATTCGGCCCTGAAGCTGGGGCAGGCGCGGGGGGCGGCCATCGTCGCGGCAATGGAGGAGGGG 
TTGAGCGTGGCGGAGTACACCGCCTCGCAGGTCAAGCAGGCAGTCGTGGGGACCGGCGGTGCAGACAAGCAG 
CAGGTGCAGATGATGGTCATGCATCTGTTGAAGCTGACCCAGAAACCGCAGATCGATGCCTCCGACGCCCTG 
GCCATCGCCCTGTGTCATGCCCATACCCAACAGAGTCTGGTCCCCCATGGCCTGGTGGGCGCACGCCGACGT 
GGCGGGCGCCTGCGTCTTTGA