ViewGene

Locus Name:
GeneID:
Location:

GeneID:4236
TrivialName: PA14_07000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07000
PAO1 Ortholog Locus:PA0538
Sequence Length:510
Protein Length:169
Start: 607453
Stop: 606944
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03927.1|AE004490_7 (AE004490) disulfide bond formation protein [Pseudomonas aeruginosa PAO1]
Identities = 169/169 (100%), Positives = 169/169 (100%)
Sequence:
TTGAGCGCTCTCCTCAAGCCCCTCGACAACCGCTTGTTCTGGCCCGCGGTCGCCATCGGCGGCCTGCTGATC
CTCGCTTTCGTACTCTACCTCCAGCACGTGCGCGGCTTCGCGCCCTGCTCGCTGTGCATCTTCATTCGCCTG
GACGTGCTCGGCCTGGTGCTCGCCGGGATCGTCGGCAGCCTCGCCCCGCGTTCGCGGATCGCCGGCGGCATC
GCCGCGCTGGGCATGCTCGCCGCCAGCCTGGGCGGGATCTACCACGCCTGGTCGCTGGTCGCGGAAGAGAAA
CTGGCTGCCCAGGGCATGGGCAGTTGCAAGATGTTCATGGGCTTCCCCGAATGGATACCGCTGGACACCTGG
CTGCCGCAGGTCTTCCAGCCCGAGGGGCTGTGCGGCGAAGTGGTCTGGACCCTGCTCGGCCAGTCCATGGCG
GTCTGGTCGCTGGCGCTGTTCGTGTTCTGCCTGCTGGTCCTGGCGGCCAAGCTGGCGTTCGGCCGCCGCACC
GCCTGA
Translation:
MSALLKPLDNRLFWPAVAIGGLLILAFVLYLQHVRGFAPCSLCIFIRLDVLGLVLAGIVGSLAPRSRIAGGI
AALGMLAASLGGIYHAWSLVAEEKLAAQGMGSCKMFMGFPEWIPLDTWLPQVFQPEGLCGEVVWTLLGQSMA
VWSLALFVFCLLVLAAKLAFGRRTA*
AnnotationID:4242GeneID:4236
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:29
Gene Name:dsbB
Confidence Code:2
GeneProduct:disulfide bond formation protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1495
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1495, DsbB, Disulfide bond formation protein DsbB 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 170 residues,  99.4% aligned
Score = 90.5 bits (224), Expect = 9e-20
Identities = 58/172 (33%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Genomic Context:
Comment:
ReferenceID:15050
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25615
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33847
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4236_cdd.html
URL:
ReferenceID:35296
Author/Investigator(s): Kwon AR, Oh TG, Kim DH, Choi EC.
Title: Molecular cloning of the arylsulfate sulfotransferase gene and characterization of its product from Enterobacter amnigenus AR-37.
PubMed: 10600454
MedLine:
Source:
Protein Expr Purif. 1999 Dec;17(3):366-72.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10600454
ReferenceID:35297
Author/Investigator(s): Missiakas D, Georgopoulos C, Raina S.
Title: Identification and characterization of the Escherichia coli gene dsbB, whose product is involved in the formation of disulfide bonds in vivo.
PubMed: 7688471
MedLine:
Source:
Proc Natl Acad Sci U S A. 1993 Aug 1;90(15):7084-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7688471
Homologs By Global Alignment
Gene ID:4236

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6532 PA0538_tr translation of PA0538 169 99.99 99.99 0 874.0
177291 gb|AAG03927.1|AE004490_7 (AE004490) disulfide bond formation protein [Pseudomonas aeruginosa PAO1] 169 99.40 99.99 0 872.0
GC ORFID: 47238How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0538Glimmer Score:
Start: 6408795Stop: 6408286
Length: 510
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0538 translation of PA0538Homolog Bit Score 341.0
Other Homologs: t_PA0538 (ORF: GLIMMER)
GC ORF Sequence
TTGAGCGCTCTCCTCAAGCCCCTCGACAACCGCTTGTTCTGGCCCGCGGTCGCCATCGGCGGCCTGCTGATC
CTCGCTTTCGTACTCTACCTCCAGCACGTGCGCGGCTTCGCGCCCTGCTCGCTGTGCATCTTCATTCGCCTG
GACGTGCTCGGCCTGGTGCTCGCCGGGATCGTCGGCAGCCTCGCCCCGCGTTCGCGGATCGCCGGCGGCATC
GCCGCGCTGGGCATGCTCGCCGCCAGCCTGGGCGGGATCTACCACGCCTGGTCGCTGGTCGCGGAAGAGAAA
CTGGCTGCCCAGGGCATGGGCAGTTGCAAGATGTTCATGGGCTTCCCCGAATGGATACCGCTGGACACCTGG
CTGCCGCAGGTCTTCCAGCCCGAGGGGCTGTGCGGCGAAGTGGTCTGGACCCTGCTCGGCCAGTCCATGGCG
GTCTGGTCGCTGGCGCTGTTCGTGTTCTGCCTGCTGGTCCTGGCGGCCAAGCTGGCGTTCGGCCGCCGCACC
GCCTGA