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ViewGene |
Locus Name:
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GeneID: |
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Location: |
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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG03861.1|AE004485_2 (AE004485) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
Identities = 172/172 (100%), Positives = 172/172 (100%)
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Sequence:
GTGTCGGCGGGTGACGTCAGCAACAGCGAATTCGTGGGTAGCCTGTACCGGGACCACCGCGGCTGGCTGCTT
GCCTGGCTGAACCGCAACCTCGGCTGCCGCCAGCGCGCCGAAGACCTCAGCCAGGACACCTTCGTTCGCCTC
CTCGGCCGCCCGGAGCTGCCCGGCCTGCGCGAACCGCGCGCGTTCCTGGCGAAGGTGGCGCGCGGCCTGATG
ATCGACCACTTCCGCCGCGCCGCCCTTGAGCAGGCCTATCTCGCCGAACTGGCGCTGGTTCCGGAAGCGGAG
CAGCCTTCGGCCGAAGAGCAGTACCTGATTCTCGAGGACCTCCGCGAGATCGATCGCCTGCTTGGCACGCTG
TCGCTGAAGGCGCGCAGCGCGTTTCTCTATAGCCGCCTGGACGGCATGCCCCACGCGGAGATCGCCGAGCGT
CTCGGAGTCTCGGTGCCGCGCGTGCGCCAATACCTGGCCCAGGGCCTGCGCCAGTGCTACATCGCCCTCTAC
GGAGAGCCCCGGTGA |
Translation:
MSAGDVSNSEFVGSLYRDHRGWLLAWLNRNLGCRQRAEDLSQDTFVRLLGRPELPGLREPRAFLAKVARGLM
IDHFRRAALEQAYLAELALVPEAEQPSAEEQYLILEDLREIDRLLGTLSLKARSAFLYSRLDGMPHAEIAER
LGVSVPRVRQYLAQGLRQCYIALYGEPR* |
AnnotationID:4241 | GeneID:4235 |
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Modification Date/Time: |
2005-03-27 09:09:03 |
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GeneProduct: | putative RNA polymerase sigma-70 factor, ECF subfamily |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (25) Transcriptional regulators |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN65983.1|AE016227_4 (AE016775) RNA polymerase sigma-70 factor, ECF subfamily
[Pseudomonas putida KT2440]
Length = 172
Score = 270 bits (690), Expect = 3e-72
Identities = 134/171 (78%), Positives = 151/171 (88%)
>gb|AAO53988.1| (AE016857) RNA polymerase sigma-70 family protein [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 172
Score = 261 bits (667), Expect = 1e-69
Identities = 131/171 (76%), Positives = 147/171 (85%)
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Structural Features: | COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit,
sigma24 homolog
[Transcription]
CD-Length = 182 residues, 93.4% aligned
Score = 99.8 bits (248), Expect = 2e-22
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 3/170 (1%) |
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Homologs By Global Alignment |
Gene ID:4235 |
Identity: |
0% |
10% |
20% |
30% |
40% |
50% |
60% |
70% |
80% |
90% |
100% |
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HomologID |
Accession |
Description |
Length |
PctIdentity |
PctSimilarity |
Gaps |
Score |
6525 |
PA0472_tr |
translation of PA0472 |
172 |
99.99 |
99.99 |
0 |
875.0 |
177239 |
gb|AAG03861.1|AE004485_2 |
(AE004485) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1] |
172 |
99.41 |
99.99 |
0 |
872.0 |
177240 |
gb|AAC06218.1| |
(AF051691) ECF sigma factor [Pseudomonas aeruginosa] |
172 |
97.09 |
97.67 |
2 |
829.0 |
177241 |
gb|AAN65983.1|AE016227_4 |
(AE016775) RNA polymerase sigma-70 factor, ECF subfamily [Pseudomonas putida KT2440] |
172 |
77.32 |
87.79 |
0 |
685.0 |
177242 |
gb|AAO53988.1| |
(AE016857) RNA polymerase sigma-70 family protein [Pseudomonas syringae pv. tomato str. DC3000] |
172 |
75.58 |
85.46 |
0 |
662.0 |
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GC ORFID: 47237 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA0472 | Glimmer Score: |
Start: 6348168 | Stop: 6347650 |
Length: 519 | |
Start Codon: GTG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA0472 translation of PA0472 | Homolog Bit Score 341.0 |
Other Homologs: psyr_15may02_Scaffold6_revised_gene6627 (ORF: BLASTX 265.0), t_PA1912 (ORF: BLASTX 160.0), t_PA2468 (ORF: BLASTX 156.0), t_PA3899 (ORF: BLASTX 154.0), t_PA2050 (ORF: BLASTX 145.0), psyr_15may02_Scaffold3_revised_gene5013 (ORF: BLASTX 144.0), psyr_15may02_Scaffold1_revised_gene1362 (ORF: BLASTX 141.0), t_PA2093 (ORF: BLASTX 133.0), t_PA4896 (ORF: BLASTX 118.0) |
GC ORF Sequence |
GTGTCGGCGGGTGACGTCAGCAACAGCGAATTCGTGGGTAGCCTGTACCGGGACCACCGCGGCTGGCTGCTT GCCTGGCTGAACCGCAACCTCGGCTGCCGCCAGCGCGCCGAAGACCTCAGCCAGGACACCTTCGTTCGCCTC CTCGGCCGCCCGGAGCTGCCCGGCCTGCGCGAACCGCGCGCGTTCCTGGCGAAGGTGGCGCGCGGCCTGATG ATCGACCACTTCCGCCGCGCCGCCCTTGAGCAGGCCTATCTCGCCGAACTGGCGCTGGTTCCGGAAGCGGAG CAGCCTTCGGCCGAAGAGCAGTACCTGATTCTCGAGGACCTCCGCGAGATCGATCGCCTGCTTGGCACGCTG TCGCTGAAGGCGCGCAGCGCGTTTCTCTATAGCCGCCTGGACGGCATGCCCCACGCGGAGATCGCCGAGCGT CTCGGAGTCTCGGTGCCGCGCGTGCGCCAATACCTGGCCCAGGGCCTGCGCCAGTGCTACATCGCCCTCTAC GGAGAGCCCCGGTGA |
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