ViewGene
Locus Name:
GeneID:
Location:

GeneID:4234
TrivialName: PA14_72770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72770
PAO1 Ortholog Locus:PA5515
Sequence Length:501
Protein Length:166
Start: 6481781
Stop: 6481281
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08900.1|AE004964_3 (AE004964) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 165/166 (99%), Positives = 166/166 (100%)
Sequence:
ATGGGGGCTAATTCACATGGCGAAAACACCCCCCACTCGCTGCCTGCCGGGAGAACGGGTAAGCTGGCCGTC
CCCCTACACCGGATTCCGCTCGTGACCCTGGGTAACCTTTTCGTCATGCTCCTGTTGGGCGCCGCCGCAGCC
TGGTGGTGGCGCGCCCATGGCGTGCGCGAGCGGGCGTTACTGCTGGCCAAACAGCATTGCGCCAAGCAGGGC
GTGGAACTGCTCGACGAGAATGTCGCGCGCCGGCGCCTGCGCCTGGCCCGTGACCACCGCGGGCAGTGGCGG
CTGAGCCGCGAGTTCGGTTTCGAATTCACCGTCAGCGGCGAGGAACGCTACGCCGGGCGCATCGTCATGTAT
GGCTATCACCTCGGCGCCATCGAATTGGCCCCGCATCGCTTCGAGGCGGCCGCCGAGGTCGACAACCCGCCG
GTGCATAGCGCCGAGGTGATTCGCCTCGACGAGTGGCGGCAGTCCCGGCAGAAAAAGGTCGGCGACTGA
Translation:
MGANSHGENTPHSLPAGRTGKLAVPLHRIPLVTLGNLFVMLLLGAAAAWWWRAHGVRERALLLAKQHCAKQG
VELLDENVARRRLRLARDHRGQWRLSREFGFEFTVSGEERYAGRIVMYGYHLGAIELAPHRFEAAAEVDNPP
VHSAEVIRLDEWRQSRQKKVGD*
AnnotationID:4240GeneID:4234
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5515
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8469




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25611




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4234
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6524
                           PA5515_tr
                           translation of PA5515
                           166
                           99.39
                           99.99
                           0
                           875.0
     

     
     
177236
                           gb|AAG08900.1|AE004964_3
                           (AE004964) hypothetical protein PA5515 [Pseudomonas aeruginosa PAO1]
                           166
                           99.39
                           99.99
                           0
                           875.0
     

     
     
177237
                           gb|AAO58941.1|
                           (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           167
                           43.11
                           58.68
                           38
                           371.0
     

     
     
177238
                           gb|AAN70923.1|AE016736_6
                           (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440]
                           166
                           36.74
                           51.80
                           34
                           307.0
     

     






      

          
GC ORFID: 47236How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5515Glimmer Score: 

          
Start: 5745470Stop: 5744970

          
Length: 501


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5515 translation of PA5515Homolog Bit Score 341.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2923 (ORF: BLASTX 153.0), t_PA5515 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGGGCTAATTCACATGGCGAAAACACCCCCCACTCGCTGCCTGCCGGGAGAACGGGTAAGCTGGCCGTC 
CCCCTACACCGGATTCCGCTCGTGACCCTGGGTAACCTTTTCGTCATGCTCCTGTTGGGCGCCGCCGCAGCC 
TGGTGGTGGCGCGCCCATGGCGTGCGCGAGCGGGCGTTACTGCTGGCCAAACAGCATTGCGCCAAGCAGGGC 
GTGGAACTGCTCGACGAGAATGTCGCGCGCCGGCGCCTGCGCCTGGCCCGTGACCACCGCGGGCAGTGGCGG 
CTGAGCCGCGAGTTCGGTTTCGAATTCACCGTCAGCGGCGAGGAACGCTACGCCGGGCGCATCGTCATGTAT 
GGCTATCACCTCGGCGCCATCGAATTGGCCCCGCATCGCTTCGAGGCGGCCGCCGAGGTCGACAACCCGCCG 
GTGCATAGCGCCGAGGTGATTCGCCTCGACGAGTGGCGGCAGTCCCGGCAGAAAAAGGTCGGCGACTGA