ViewGene
Locus Name:
GeneID:
Location:

GeneID:4233
TrivialName: PA14_11280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11280
PAO1 Ortholog Locus:PA4066
Sequence Length:519
Protein Length:172
Start: 982535
Stop: 982017
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07453.1|AE004822_13 (AE004822) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 171/171 (100%), Positives = 171/171 (100%)
Sequence:
ATGCTGCGCTCCCTGACCGTCCTCCTGCTGGCTTTCGCCCTGCTCCTGGGCAGTGCCGTGGCGCGCGCCGCG
CCGCGCGAACTGACCTGGTCGCAACTGATCCCGGCCGGCGCCCCGCCCGCCCCGGCGCCGCTGCCGATCCAC
GACCTCGCCAACGCCCTCAGCGAAGCCGGCCCGGCGGCCAGCCAGCAGAGCCCCAACGCCCCGGTGGTGAAG
GCACTGGACGGCATCGAGGCCAAGCTGCCGGGCTACATCGTGCCGCTGGAAATCAGCGAGGCCGGGCTGGTC
ACCGAGTTCCTCCTGGTCCCCTACTACGGCGCCTGCATCCACGTACCGCCGCCGCCGTCGAACCAGATCGTC
TACGTGAAGACCGCCAAGGGCGTGCAGATGGACGAGTTGTACCAGCCGTTCTGGGTCGAGGGCACCTTCAAG
GTGGAGAACGCCAGCAGCGAGCTGGCGGCGGCCGGCTACCGCATGCAGGCGAGCAAGGTGACGCCCTACGAA
TACGAAGGTAGCTGA
Translation:
MLRSLTVLLLAFALLLGSAVARAAPRELTWSQLIPAGAPPAPAPLPIHDLANALSEAGPAASQQSPNAPVVK
ALDGIEAKLPGYIVPLEISEAGLVTEFLLVPYYGACIHVPPPPSNQIVYVKTAKGVQMDELYQPFWVEGTFK
VENASSELAAAGYRMQASKVTPYEYEGS*
AnnotationID:4239GeneID:4233
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:09
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA4066
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66133.1|AE016242_1 (AE016775) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 212

 Score =  197 bits (500), Expect = 3e-50
 Identities = 99/166 (59%), Positives = 126/166 (75%), Gaps = 5/166 (3%)

>gb|AAO54222.1| (AE016858) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 174

 Score =  195 bits (495), Expect = 1e-49
 Identities = 100/170 (58%), Positives = 127/170 (74%), Gaps = 5/170 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8467




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25609




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36817




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4233_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4233
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6522
                           PA4066_tr
                           translation of PA4066
                           172
                           99.41
                           99.41
                           0
                           874.0
     

     
     
177229
                           gb|AAG07453.1|AE004822_13
                           (AE004822) hypothetical protein PA4066 [Pseudomonas aeruginosa PAO1]
                           172
                           99.41
                           99.41
                           0
                           874.0
     

     
     
177231
                           gb|AAO54222.1|
                           (AE016858) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           178
                           57.86
                           73.03
                           10
                           502.0
     

     
     
177230
                           gb|AAN66133.1|AE016242_1
                           (AE016775) lipoprotein, putative [Pseudomonas putida KT2440]
                           214
                           46.72
                           59.34
                           44
                           502.0
     

     
     
177234
                           dbj|BAC58562.1|
                           (AP005073) conserved hypothetical protein [Vibrio parahaemolyticus]
                           174
                           39.65
                           53.44
                           12
                           296.0
     

     






      

          
GC ORFID: 47235How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4066Glimmer Score: 

          
Start: 3971402Stop: 3971920

          
Length: 519


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4066 translation of PA4066Homolog Bit Score 341.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1334 (ORF: BLASTX 194.0), psyr_15may02_Scaffold2_revised_gene4190 (ORF: BLASTX 121.0), t_PA5423 (ORF: BLASTX 118.0), t_PA4066 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCGCTCCCTGACCGTCCTCCTGCTGGCTTTCGCCCTGCTCCTGGGCAGTGCCGTGGCGCGCGCCGCG 
CCGCGCGAACTGACCTGGTCGCAACTGATCCCGGCCGGCGCCCCGCCCGCCCCGGCGCCGCTGCCGATCCAC 
GACCTCGCCAACGCCCTCAGCGAAGCCGGCCCGGCGGCCAGCCAGCAGAGCCCCAACGCCCCGGTGGTGAAG 
GCACTGGACGGCATCGAGGCCAAGCTGCCGGGCTACATCGTGCCGCTGGAAATCAGCGAGGCCGGGCTGGTC 
ACCGAGTTCCTCCTGGTCCCCTACTACGGCGCCTGCATCCACGTACCGCCGCCGCCGTCGAACCAGATCGTC 
TACGTGAAGACCGCCAAGGGCGTGCAGATGGACGAGTTGTACCAGCCGTTCTGGGTCGAGGGCACCTTCAAG 
GTGGAGAACGCCAGCAGCGAGCTGGCGGCGGCCGGCTACCGCATGCAGGCGAGCAAGGTGACGCCCTACGAA 
TACGAAGGTAGCTGA