ViewGene
Locus Name:
GeneID:
Location:

GeneID:4231
TrivialName: PA14_72560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72560
PAO1 Ortholog Locus:PA5499
Sequence Length:504
Protein Length:167
Start: 6465417
Stop: 6465920
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08884.1|AE004962_8 (AE004962) transcriptional regulator np20 [Pseudomonas aeruginosa PAO1]
Identities = 167/167 (100%), Positives = 167/167 (100%)
Sequence:
ATGTACAAGATTGCGCCCAAGACCCCGCTGGCCTGCCAGCCCCATGACCACAGCCAGTGCGTCAGCACCGCG
CTGGCCGAGGCCGATGCGCTGTGCGCGCGCCAGGGCGTGCGCCTGACCGAACTACGGCGGCGCGTGCTGGAA
CTGGTCTGGCAGAGCCACAAGCCGCTGGGGGCCTACGATATCCTCGCGGTGCTCAGCGAAACCGACGGCCGC
CGCGCCGCGCCGCCGACCGTCTACCGCGCGCTGGACTTCCTCCAGGAGAACGGCCTGGTGCACCGCATCGCC
TCGCTCAACGCATTCGTCGGCTGCAACAACCCGGAGCACAGCCACCAGGGCCAGTTCCTCATCTGCCGCACC
TGCCACACCGCGATCGAGCTGGAACAGCCGGATATCAGCCGGGCCATCGTCGCCGGAGCGAACAGCGTCGGC
TTCGCCGTTGAAAGCCAGACCGTCGAGGTGGTCGGCCTCTGCGGCACCTGCCGGGACCAGAAGGACGCCTGA
Translation:
MYKIAPKTPLACQPHDHSQCVSTALAEADALCARQGVRLTELRRRVLELVWQSHKPLGAYDILAVLSETDGR
RAAPPTVYRALDFLQENGLVHRIASLNAFVGCNNPEHSHQGQFLICRTCHTAIELEQPDISRAIVAGANSVG
FAVESQTVEVVGLCGTCRDQKDA*
AnnotationID:4237GeneID:4231
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:35
Gene Name:np20
Confidence Code:1
GeneProduct:transcriptional regulator np20
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:Fe2+/Zn2+ uptake regulator
Functional Category Confidence Code:5
COGs:COG0735
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58693.1| (AE016875) zinc uptake regulation protein, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 160

 Score =  256 bits (655), Expect = 3e-68
 Identities = 122/157 (77%), Positives = 134/157 (85%)

>gb|AAN65753.1|AE016201_5 (AE016774) transcriptional regulator, Fur family [Pseudomonas
           putida KT2440]
          Length = 135

 Score =  227 bits (579), Expect = 2e-59
 Identities = 109/132 (82%), Positives = 116/132 (87%)






 
Structural Features:
COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins 
[Inorganic ion transport and metabolism]
CD-Length = 145 residues, 100.0% aligned
Score =  126 bits (319), Expect = 1e-30
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 2/147 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8464




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25605




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33254




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4231_cdd.html


    		




 
URL:

















    ReferenceID:35597




  
Author/Investigator(s):
        Wang J, Lory S, Ramphal R, Jin S.





  
Title:
        Isolation and characterization of Pseudomonas aeruginosa genes inducible by respiratory mucus derived from cystic fibrosis patients.




  
PubMed:
        8971720


MedLine:
        




    
Source:
Mol Microbiol. 1996 Dec;22(5):1005-12.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8971720









           
Homologs By Global Alignment 

           

       



     
Gene ID:4231
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6521
                           PA5499_tr
                           translation of PA5499
                           167
                           99.99
                           99.99
                           0
                           876.0
     

     
     
177218
                           gb|AAG08884.1|AE004962_8
                           (AE004962) transcriptional regulator np20 [Pseudomonas aeruginosa PAO1]
                           167
                           99.99
                           99.99
                           0
                           876.0
     

     
     
177219
                           gb|AAO58693.1|
                           (AE016875) zinc uptake regulation protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           167
                           73.05
                           80.23
                           7
                           651.0
     

     
     
177220
                           gb|AAN65753.1|AE016201_5
                           (AE016774) transcriptional regulator, Fur family [Pseudomonas putida KT2440]
                           167
                           65.26
                           69.46
                           32
                           577.0
     

     
     
177221
                           gb|AAB17259.1|
                           (U58365) Np20 [Pseudomonas aeruginosa]
                           171
                           50.87
                           50.87
                           81
                           441.0
     

     






      

          
GC ORFID: 47233How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5499Glimmer Score: 

          
Start: 5729106Stop: 5729609

          
Length: 504


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5499 translation of PA5499Homolog Bit Score 342.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6732 (ORF: BLASTX 260.0), t_PA5499 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACAAGATTGCGCCCAAGACCCCGCTGGCCTGCCAGCCCCATGACCACAGCCAGTGCGTCAGCACCGCG 
CTGGCCGAGGCCGATGCGCTGTGCGCGCGCCAGGGCGTGCGCCTGACCGAACTACGGCGGCGCGTGCTGGAA 
CTGGTCTGGCAGAGCCACAAGCCGCTGGGGGCCTACGATATCCTCGCGGTGCTCAGCGAAACCGACGGCCGC 
CGCGCCGCGCCGCCGACCGTCTACCGCGCGCTGGACTTCCTCCAGGAGAACGGCCTGGTGCACCGCATCGCC 
TCGCTCAACGCATTCGTCGGCTGCAACAACCCGGAGCACAGCCACCAGGGCCAGTTCCTCATCTGCCGCACC 
TGCCACACCGCGATCGAGCTGGAACAGCCGGATATCAGCCGGGCCATCGTCGCCGGAGCGAACAGCGTCGGC 
TTCGCCGTTGAAAGCCAGACCGTCGAGGTGGTCGGCCTCTGCGGCACCTGCCGGGACCAGAAGGACGCCTGA