ViewGene

Locus Name:
GeneID:
Location:

GeneID:4229
TrivialName: PA14_66610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66610
PAO1 Ortholog Locus:PA5039
Sequence Length:519
Protein Length:172
Start: 5947104
Stop: 5946586
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08424.1|AE004917_3 (AE004917) shikimate kinase [Pseudomonas aeruginosa PAO1]
Identities = 172/172 (100%), Positives = 172/172 (100%)
Sequence:
GTGGTCAACCTGATCCTCGTCGGCCCGATGGGTGCTGGAAAGAGCACCATCGGGCGCCTGCTCGCCAAGGAG
CTGCATCTCGCGTTCAAGGACTCCGACAAGGAGATCGAACAGCGGTGCGGCGCGAATATCCCATGGATCTTC
GATGTCGAGGGCGAGGTCGGTTTCCGCGAGCGCGAGCAGGCCATGCTCACCGAACTCTGCGCCGCCGACGGT
ATGGTGATCGCCACCGGCGGCGGGGCGGTGATGCGCGACGGTAACCGCCAGGTGCTGCGCGCCGGTGGCCGG
GTTGTGTACCTGCATGCCTCGGTCGAGCACCAGATCGCGCGCACGGCGCGGGACCGCAACCGCCCCTTGTTG
CAGAAGCCCAACCCGGGACAGATCCTCCGCGACCTGATGGCGCTGCGCGACCCGCTCTACCGCGAAATCGCC
GATGTGGTGGTGGAGACCGACGAAAGGCCGCCGCGCCTGGTCGTCCAGGAAATTCTCGAACGCCTGCGCAAG
TTGCCGCCCCGCTGA
Translation:
MVNLILVGPMGAGKSTIGRLLAKELHLAFKDSDKEIEQRCGANIPWIFDVEGEVGFREREQAMLTELCAADG
MVIATGGGAVMRDGNRQVLRAGGRVVYLHASVEHQIARTARDRNRPLLQKPNPGQILRDLMALRDPLYREIA
DVVVETDERPPRLVVQEILERLRKLPPR*
AnnotationID:4235GeneID:4229
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 10:10:42
Gene Name:aroK
Confidence Code:2
GeneProduct:shikimate kinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0703,pfam01202
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:2.7.1.71
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58554.1| (AE016874) shikimate kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 172

 Score =  275 bits (702), Expect = 1e-73
 Identities = 136/172 (79%), Positives = 151/172 (87%)

>gb|AAN70644.1|AE016708_5 (AE016793) shikimate kinase [Pseudomonas putida KT2440]
          Length = 172

 Score =  273 bits (698), Expect = 3e-73
 Identities = 135/172 (78%), Positives = 149/172 (86%)

>gb|AAN53371.1|AE015477_1 (AE015477) shikimate kinase [Shewanella oneidensis MR-1]
          Length = 171

 Score =  187 bits (474), Expect = 3e-47
 Identities = 92/164 (56%), Positives = 121/164 (73%)

Structural Features:
COG0703, AroK, Shikimate kinase [Amino acid transport and metabolism]
CD-Length = 172 residues,  99.4% aligned
Score =  210 bits (537), Expect = 5e-56
Identities = 89/172 (51%), Positives = 115/172 (66%), Gaps = 1/172 (0%)

pfam01202, SKI, Shikimate kinase.
CD-Length = 167 residues,  99.4% aligned
Score =  171 bits (434), Expect = 4e-44
Identities = 79/166 (47%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Genomic Context:
Comment:
ReferenceID:15044
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25601
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35006
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4229_cdd.html
URL:
ReferenceID:35849
Author/Investigator(s): Lobner-Olesen A, Marinus MG
Title: Identification of the gene (aroK) encoding shikimic acid kinase I of Escherichia coli.
PubMed: 1309529
MedLine:
Source:
J Bacteriol. 1992 Jan;174(2):525-9.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1309529
ReferenceID:35850
Author/Investigator(s): Lobner-Olesen A, Boye E, Marinus MG.
Title: Expression of the Escherichia coli dam gene.
PubMed: 1630320
MedLine:
Source:
Mol Microbiol. 1992 Jul;6(13):1841-51.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1630320
ReferenceID:35851
Author/Investigator(s): Griffin HG, Gasson MJ.
Title: The gene (aroK) encoding shikimate kinase I from Escherichia coli.
PubMed: 7612934
MedLine:
Source:
DNA Seq. 1995;5(3):195-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7612934
Homologs By Global Alignment
Gene ID:4229

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6519 PA5039_tr translation of PA5039 172 99.99 99.99 0 876.0
177069 gb|AAG08424.1|AE004917_3 (AE004917) shikimate kinase [Pseudomonas aeruginosa PAO1] 172 99.41 99.99 0 873.0
177070 gb|AAO58554.1| (AE016874) shikimate kinase [Pseudomonas syringae pv. tomato str. DC3000] 172 78.48 87.79 0 698.0
177071 gb|AAN70644.1|AE016708_5 (AE016793) shikimate kinase [Pseudomonas putida KT2440] 172 77.90 86.62 0 694.0
177072 gb|AAN53371.1|AE015477_1 (AE015477) shikimate kinase [Shewanella oneidensis MR-1] 175 52.57 69.14 7 464.0
GC ORFID: 47231How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5039Glimmer Score:
Start: 5210787Stop: 5210269
Length: 519
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5039 translation of PA5039Homolog Bit Score 342.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3295 (ORF: BLASTX 271.0), t_PA5039 (ORF: GLIMMER)
GC ORF Sequence
GTGGTCAACCTGATCCTCGTCGGCCCGATGGGTGCTGGAAAGAGCACCATCGGGCGCCTGCTCGCCAAGGAG
CTGCATCTCGCGTTCAAGGACTCCGACAAGGAGATCGAACAGCGGTGCGGCGCGAATATCCCATGGATCTTC
GATGTCGAGGGCGAGGTCGGTTTCCGCGAGCGCGAGCAGGCCATGCTCACCGAACTCTGCGCCGCCGACGGT
ATGGTGATCGCCACCGGCGGCGGGGCGGTGATGCGCGACGGTAACCGCCAGGTGCTGCGCGCCGGTGGCCGG
GTTGTGTACCTGCATGCCTCGGTCGAGCACCAGATCGCGCGCACGGCGCGGGACCGCAACCGCCCCTTGTTG
CAGAAGCCCAACCCGGGACAGATCCTCCGCGACCTGATGGCGCTGCGCGACCCGCTCTACCGCGAAATCGCC
GATGTGGTGGTGGAGACCGACGAAAGGCCGCCGCGCCTGGTCGTCCAGGAAATTCTCGAACGCCTGCGCAAG
TTGCCGCCCCGCTGA