ViewGene
Locus Name:
GeneID:
Location:

GeneID:4228
TrivialName: PA14_65630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65630
PAO1 Ortholog Locus:PA4965
Sequence Length:525
Protein Length:174
Start: 5846408
Stop: 5845884
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08350.1|AE004909_6 (AE004909) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 173/174 (99%), Positives = 174/174 (100%)
Sequence:
GTGACGCAACAGGCGCCCGGTCAGCGGCTGGGACGGATCATGCTGGTGCTGGCCTGGATCGCCGGGCTGGCG
CTGGCGACGCGCTATTTCGGCGTCTGGGAAGATCGACAGCGCAACCCGAACCAGGCGCCGCAATCGATCCAT
GGCGACGGCTACGTCGAGTTGCGCCTGGCCAGCAGCCGCCAGGGCCATTACCTGCTGAACGGGCAGATCAAC
GGCCAGGGCGTGACCTTCCTGCTCGATACCGGGGCGACCCAGGTGGCGGTGCCGGAAGCCCTGGCGGCAAGA
CTCGCGCTGGAGCGCGGCGCGCCGATCACCCTGAGCACGGCCAACGGCCGCGCCACGGGCTGGCGCACGCGG
CTGGACCAGCTGCAACTCGGCGATATCCGCCTGTCCGGGGTCGCGGCGCTGATTGCGCCGGGCATGGACGGC
GATGAGGTGCTACTCGGCATGAGCGCCCTGAAACAACTCGAATTCACCCAGCGCGACGGCACCCTGGTGCTG
CGCCAAAACACTTCTCCGTGA
Translation:
MTQQAPGQRLGRIMLVLAWIAGLALATRYFGVWEDRQRNPNQAPQSIHGDGYVELRLASSRQGHYLLNGQIN
GQGVTFLLDTGATQVAVPEALAARLALERGAPITLSTANGRATGWRTRLDQLQLGDIRLSGVAALIAPGMDG
DEVLLGMSALKQLEFTQRDGTLVLRQNTSP*
AnnotationID:4234GeneID:4228
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 17:05:33
Gene Name:
Confidence Code:3
GeneProduct:putative aspartyl protease
Cell Localization:()
Synonyms:PA4965
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3577
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
COG3577, COG3577, Predicted aspartyl protease 
CD-Length = 215 residues,  81.9% aligned
Score =  180 bits (459), Expect = 5e-47
Identities = 71/176 (40%), Positives = 100/176 (56%), Gaps = 5/176 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15042




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25599




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35027




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4228_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4228
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6518
                           PA4965_tr
                           translation of PA4965
                           174
                           99.42
                           99.99
                           0
                           877.0
     

     
     
177066
                           gb|AAG08350.1|AE004909_6
                           (AE004909) hypothetical protein PA4965 [Pseudomonas aeruginosa PAO1]
                           174
                           98.85
                           99.99
                           0
                           874.0
     

     
     
177067
                           gb|AAN70480.1|AE016689_8
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           174
                           62.64
                           79.31
                           2
                           586.0
     

     
     
177068
                           gb|AAO58389.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           178
                           57.30
                           76.40
                           5
                           558.0
     

     






      

          
GC ORFID: 47230How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4965Glimmer Score: 

          
Start: 5110090Stop: 5109566

          
Length: 525


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4965 translation of PA4965Homolog Bit Score 342.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3413 (ORF: BLASTX 227.0), t_PA4965 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACGCAACAGGCGCCCGGTCAGCGGCTGGGACGGATCATGCTGGTGCTGGCCTGGATCGCCGGGCTGGCG 
CTGGCGACGCGCTATTTCGGCGTCTGGGAAGATCGACAGCGCAACCCGAACCAGGCGCCGCAATCGATCCAT 
GGCGACGGCTACGTCGAGTTGCGCCTGGCCAGCAGCCGCCAGGGCCATTACCTGCTGAACGGGCAGATCAAC 
GGCCAGGGCGTGACCTTCCTGCTCGATACCGGGGCGACCCAGGTGGCGGTGCCGGAAGCCCTGGCGGCAAGA 
CTCGCGCTGGAGCGCGGCGCGCCGATCACCCTGAGCACGGCCAACGGCCGCGCCACGGGCTGGCGCACGCGG 
CTGGACCAGCTGCAACTCGGCGATATCCGCCTGTCCGGGGTCGCGGCGCTGATTGCGCCGGGCATGGACGGC 
GATGAGGTGCTACTCGGCATGAGCGCCCTGAAACAACTCGAATTCACCCAGCGCGACGGCACCCTGGTGCTG 
CGCCAAAACACTTCTCCGTGA