ViewGene

Locus Name:
GeneID:
Location:

GeneID:4227
TrivialName: PA14_57920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57920
PAO1 Ortholog Locus:PA4460
Sequence Length:528
Protein Length:175
Start: 5154983
Stop: 5155510
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07848.1|AE004860_4 (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 175/175 (100%), Positives = 175/175 (100%)
Sequence:
ATGAGGTTCGTTAATACCCTCCCCCTTATTTTCGGTCTGACTGCCGCCCTCGGCAGCTCCATGGCCTTGGCC
CTGCCTTCGGACCGCGAACAACCGATCCGCGTCCAGGCCGACAGCGCCGAACTGGACGACAAGCAGGGCGTC
GCGGTCTACCGCGGCGACGTCGTGGTGACCCAGGGCAGCACCAAGCTGACCGGCAACACCGTGACCCTGAAG
CAGGACAAGAACGGCGACATCGAGGTCGTGACCTCGGTCGGCAAGCCTGCCTACTACGAGCAGAAACCCGCT
CCGGACAAGGACGTGACCAAGGCCTATGGCCTGACCATCCAGTACTTCGTCACGCAGAACCGGGTCGTGCTG
ATCGACCAGGCCAAGGTGATCCAGGAAGGCAACACCTTCGAAGGCGAGAAGATCGTCTACGACACCCAGCGC
CAGATCGTCAACGCGGGTCGTGCCACCGGCTCCCAGGTGACCAGCCCGCGCCCGCGCATCGACATGGTCATC
CAGCCGAAGAAAAAGGCCCAGTAA
Translation:
MRFVNTLPLIFGLTAALGSSMALALPSDREQPIRVQADSAELDDKQGVAVYRGDVVVTQGSTKLTGNTVTLK
QDKNGDIEVVTSVGKPAYYEQKPAPDKDVTKAYGLTIQYFVTQNRVVLIDQAKVIQEGNTFEGEKIVYDTQR
QIVNAGRATGSQVTSPRPRIDMVIQPKKKAQ*
AnnotationID:4233GeneID:4227
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 07:07:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4460
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8456
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25597
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31499
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4227_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4227

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6517 PA4460_tr translation of PA4460 175 99.99 99.99 0 877.0
177062 gb|AAG07848.1|AE004860_4 (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 175 99.99 99.99 0 877.0
177064 gb|AAN66579.1|AE016286_3 (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440] 178 62.35 77.52 7 544.0
177063 gb|AAO57900.1| (AE016872) ostA family protein [Pseudomonas syringae pv. tomato str. DC3000] 182 62.08 81.31 7 608.0
177065 emb|CAD43110.1| (AJ496594) hypothetical protein [Pseudomonas stutzeri] 181 46.40 55.80 67 464.0
GC ORFID: 47229How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4460Glimmer Score:
Start: 4418662Stop: 4419189
Length: 528
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4460 translation of PA4460Homolog Bit Score 342.0
Other Homologs: t_PA4460 (ORF: GLIMMER)
GC ORF Sequence
ATGAGGTTCGTTAATACCCTCCCCCTTATTTTCGGTCTGACTGCCGCCCTCGGCAGCTCCATGGCCTTGGCC
CTGCCTTCGGACCGCGAACAACCGATCCGCGTCCAGGCCGACAGCGCCGAACTGGACGACAAGCAGGGCGTC
GCGGTCTACCGCGGCGACGTCGTGGTGACCCAGGGCAGCACCAAGCTGACCGGCAACACCGTGACCCTGAAG
CAGGACAAGAACGGCGACATCGAGGTCGTGACCTCGGTCGGCAAGCCTGCCTACTACGAGCAGAAACCCGCT
CCGGACAAGGACGTGACCAAGGCCTATGGCCTGACCATCCAGTACTTCGTCACGCAGAACCGGGTCGTGCTG
ATCGACCAGGCCAAGGTGATCCAGGAAGGCAACACCTTCGAAGGCGAGAAGATCGTCTACGACACCCAGCGC
CAGATCGTCAACGCGGGTCGTGCCACCGGCTCCCAGGTGACCAGCCCGCGCCCGCGCATCGACATGGTCATC
CAGCCGAAGAAAAAGGCCCAGTAA