ViewGene

Locus Name:
GeneID:
Location:

GeneID:4226
TrivialName: PA14_16620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16620
PAO1 Ortholog Locus:PA3693
Sequence Length:522
Protein Length:173
Start: 1422016
Stop: 1422537
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07081.1|AE004789_1 (AE004789) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 172/173 (99%), Positives = 173/173 (100%)
Sequence:
ATGACCGAGGTCCGCGTCTGGCAGGGGGACATCACCCGTCTTGCGGTGGATGCCATCGTCAACGCGGCGAAC
TCCTCGCTGCTCGGTGGGGGCGGGGTCGACGGCGCCATCCACCGCGCCGCCGGCGCCGAGCTGGTGTCGGCC
TGCCGCCTGCTGCACGGTTGCAAGACCGGCGAGGCGAAGATCACCCGCGGGTTCCGTCTGCCGGCGGCCCAC
GTGATCCACACCGTCGGCCCGGTCTGGCGCGGCGGCGACAACGGCGAAGCGGAGCTGCTGGCCAGCTGCTAC
CGGCGCAGCCTGGCTCTGGCCGAGCAGGCCGGGGCGGCCAGCGTCGCGTTCCCCGCCATCAGCTGCGGCATC
TACGGCTATCCCTTGGAGCAGGCCGCGGCCATCGCCGTCGAAGAGGTCTGCCGGCAACGCCCGGCGCACAGC
AGCCTGGAGGAAATCGTCCTGGTTGCCTTCGATAGCTCGATGGCCGAGCGCTACCAGCGCTTACTCGGCGAG
CGGCCTGTGGCCCGCTGA
Translation:
MTEVRVWQGDITRLAVDAIVNAANSSLLGGGGVDGAIHRAAGAELVSACRLLHGCKTGEAKITRGFRLPAAH
VIHTVGPVWRGGDNGEAELLASCYRRSLALAEQAGAASVAFPAISCGIYGYPLEQAAAIAVEEVCRQRPAHS
SLEEIVLVAFDSSMAERYQRLLGERPVAR*
AnnotationID:4232GeneID:4226
AnnotatorUID: diggins
Modification Date/Time: 2005-06-15 09:09:18
Gene Name:
Confidence Code:3
GeneProduct:putative phophatase
Cell Localization:()
Synonyms:PA3693
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2110,KOG2633
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2110, Predicted phosphatase homologous to the C-terminal domain 
of histone macroH2A1 
CD-Length = 179 residues,  99.4% aligned
Score =  185 bits (471), Expect = 5e-48
Identities = 100/179 (55%), Positives = 117/179 (65%), Gaps = 7/179 (3%)

KOG2633, Hismacro and SEC14 domain-containing proteins 
[Chromatin structure and dynamics, Transcription]
CD-Length = 200 residues,  80.0% aligned
Score =  152 bits (386), Expect = 3e-38
Identities = 79/169 (46%), Positives = 96/169 (56%), Gaps = 11/169 (6%)
Genomic Context:
Comment:
ReferenceID:8454
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25595
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31855
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4226_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4226

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6516 PA3693_tr translation of PA3693 173 99.42 99.99 0 878.0
177011 gb|AAG07081.1|AE004789_1 (AE004789) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 173 99.42 99.99 0 878.0
177013 gb|AAQ61225.1| (AE016922) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 180 60.55 70.00 17 517.0
177016 emb|CAD13862.1| (AL646058) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 177 56.49 68.92 10 488.0
177014 gb|AAM73435.1| (AE012967) histone macro-H2A1-related protein [Chlorobium tepidum TLS] 176 56.25 68.18 7 496.0
GC ORFID: 47228How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3693Glimmer Score:
Start: 3531921Stop: 3531400
Length: 522
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3693 translation of PA3693Homolog Bit Score 342.0
Other Homologs: t_PA3693 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGAGGTCCGCGTCTGGCAGGGGGACATCACCCGTCTTGCGGTGGATGCCATCGTCAACGCGGCGAAC
TCCTCGCTGCTCGGTGGGGGCGGGGTCGACGGCGCCATCCACCGCGCCGCCGGCGCCGAGCTGGTGTCGGCC
TGCCGCCTGCTGCACGGTTGCAAGACCGGCGAGGCGAAGATCACCCGCGGGTTCCGTCTGCCGGCGGCCCAC
GTGATCCACACCGTCGGCCCGGTCTGGCGCGGCGGCGACAACGGCGAAGCGGAGCTGCTGGCCAGCTGCTAC
CGGCGCAGCCTGGCTCTGGCCGAGCAGGCCGGGGCGGCCAGCGTCGCGTTCCCCGCCATCAGCTGCGGCATC
TACGGCTATCCCTTGGAGCAGGCCGCGGCCATCGCCGTCGAAGAGGTCTGCCGGCAACGCCCGGCGCACAGC
AGCCTGGAGGAAATCGTCCTGGTTGCCTTCGATAGCTCGATGGCCGAGCGCTACCAGCGCTTACTCGGCGAG
CGGCCTGTGGCCCGCTGA