ViewGene
Locus Name:
GeneID:
Location:

GeneID:4225
TrivialName: PA14_23590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23590
PAO1 Ortholog Locus:PA3133
Sequence Length:543
Protein Length:180
Start: 2053723
Stop: 2054265
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06521.1|AE004737_7 (AE004737) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 179/180 (99%), Positives = 179/180 (99%)
Sequence:
ATGAGCGACAAGAAAACCCAGACCCGTGCCCGCATCCTCGGTGCCGCCACCCAGGCCCTGCTCGAGCGGGGC
GCCGTCGAGCCTAGCGTCGGGGAAGTGATGGGCGCGGCGGGGCTCACCGTCGGCGGCTTCTATGCCCACTTC
CAGAGCAAGGATGCGCTGATGCTCGAGGCGTTCGAGCAATTGCTCGGCAAGCGCCGCGAACTGCTCGGCGAA
CTCGACCCCGGATTGTCGGGAAAGGAGCGTCGGGCCTTGGCGGCCGCTTTCTACCTGTCGCGCAAGCATCGG
GACGCACAGGTCGACGCCGGTTGTCCGCTGCCGGCGACCCTCGCCGAGGTGGCGCGCCTGCCGGAGGGGTTT
CGCGAGGTCTTGAGCAGGCATGTCGAGATCATGGTCGCCAGCCTGGCGGAAAGTCCCGAGGAAACCGACGTC
GCCCTGGCCGACCTGGTGTTGATGATTGGCGGTTTGGCGCTGGCCCGGGCATTGGGGCCGGGCGAGCTGTCC
GACCGGGTTCTGCGTGCCGCCAAGCAGGCGGTGAACTGA
Translation:
MSDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGE
LDPGLSGKERRALAAAFYLSRKHRDAQVDAGCPLPATLAEVARLPEGFREVLSRHVEIMVASLAESPEETDV
ALADLVLMIGGLALARALGPGELSDRVLRAAKQAVN*
AnnotationID:4231GeneID:4225
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 09:09:56
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA3133
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67593.1|AE016389_1 (AE016781) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 179

 Score =  240 bits (613), Expect = 3e-63
 Identities = 123/179 (68%), Positives = 143/179 (79%), Gaps = 1/179 (0%)

>dbj|BAC49217.1| (AP005949) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 206

 Score =  104 bits (260), Expect = 2e-22
 Identities = 69/182 (37%), Positives = 99/182 (54%), Gaps = 7/182 (3%)








 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family
CD-Length = 47 residues, 100.0% aligned
Score = 40.3 bits (95), Expect = 1e-04
Identities = 19/47 (40%), Positives = 26/47 (55%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8452




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25593




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32389




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4225_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4225
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6515
                           PA3133_tr
                           translation of PA3133
                           180
                           99.44
                           99.44
                           0
                           877.0
     

     
     
177009
                           gb|AAG06521.1|AE004737_7
                           (AE004737) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           180
                           99.44
                           99.44
                           0
                           877.0
     

     
     
177010
                           gb|AAN67593.1|AE016389_1
                           (AE016781) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           180
                           68.33
                           79.44
                           1
                           612.0
     

     






      

          
GC ORFID: 47227How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3133Glimmer Score: 

          
Start: 2900208Stop: 2899666

          
Length: 543


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3133 translation of PA3133Homolog Bit Score 342.0

          
Other Homologs:  t_PA3133 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACAAGAAAACCCAGACCCGTGCCCGCATCCTCGGTGCCGCCACCCAGGCCCTGCTCGAGCGGGGC 
GCCGTCGAGCCTAGCGTCGGGGAAGTGATGGGCGCGGCGGGGCTCACCGTCGGCGGCTTCTATGCCCACTTC 
CAGAGCAAGGATGCGCTGATGCTCGAGGCGTTCGAGCAATTGCTCGGCAAGCGCCGCGAACTGCTCGGCGAA 
CTCGACCCCGGATTGTCGGGAAAGGAGCGTCGGGCCTTGGCGGCCGCTTTCTACCTGTCGCGCAAGCATCGG 
GACGCACAGGTCGACGCCGGTTGTCCGCTGCCGGCGACCCTCGCCGAGGTGGCGCGCCTGCCGGAGGGGTTT 
CGCGAGGTCTTGAGCAGGCATGTCGAGATCATGGTCGCCAGCCTGGCGGAAAGTCCCGAGGAAACCGACGTC 
GCCCTGGCCGACCTGGTGTTGATGATTGGCGGTTTGGCGCTGGCCCGGGCATTGGGGCCGGGCGAGCTGTCC 
GACCGGGTTCTGCGTGCCGCCAAGCAGGCGGTGAACTGA