ViewGene
Locus Name:
GeneID:
Location:

GeneID:4223
TrivialName: PA14_52520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52520
PAO1 Ortholog Locus:PA0907
Sequence Length:531
Protein Length:176
Start: 4658876
Stop: 4658346
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04296.1|AE004525_4 (AE004525) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 173/176 (98%), Positives = 173/176 (98%)
Sequence:
ATGTTTCAAAGTACCGAGCAGGCGCTGGCCGTGGCCTACTGGATGTTCGAGCACCAGCCGGGACCGAAGTCG
TCGACGGCGATGGTGATCGATGGCCTGCGCGAGCGCTTCGATCGCAGCTTCATCGAACACCTGCCCAGCGGT
TTGAGTCTGCACGAATGGCAGGCCCAGGCGGTGATGACCGTGCGTTTCGCCCAGCGCCAGCTGGCTGCGCAC
CCACTGGAGCTGGCGGTGGTGCGGGCCGAGTTCGCCCGCGGGCGGGATTTCGTCCTTGGCCTGGCGGCTTTG
CGCGACTGGCTGAAGCCCGGGGCCGACCCGATCGAGCAGCGGGCAACCCTGGCCTTGCTGATGCGCATGTTC
CGTCGTCCGCCGTCGAGCATCCGCGAGATCGAGCGACTCAGCGGCCTGTCGAAGAGCACCCTGCATCGCTGG
GACAAGGAATGGCGCGAGCGGGTCGTCGCTTTGCTGCACCAGGCCTTGCAGCGACTGGAGGAGCCGATGGCG
GAGGTGGGGATCGTGTGCGAGCGCTAA
Translation:
MFQSTEQALAVAYWMFEHQPGPKSSTAMVIDGLRERFDRSFIEHLPSGLSLHEWQAQAVMTVRFAQRQLAAH
PLELAVVRAEFARGRDFVLGLAALRDWLKPGADPIEQRATLALLMRMFRRPPSSIREIERLSGLSKSTLHRW
DKEWRERVVALLHQALQRLEEPMAEVGIVCER*
AnnotationID:4229GeneID:4223
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 13:01:02
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0907
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8448




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25589




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4223
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6509
                           PA0907_tr
                           translation of PA0907
                           176
                           98.29
                           98.29
                           0
                           877.0
     

     
     
176984
                           gb|AAG04296.1|AE004525_4
                           (AE004525) hypothetical protein PA0907 [Pseudomonas aeruginosa PAO1]
                           176
                           98.29
                           98.29
                           0
                           877.0
     

     






      

          
GC ORFID: 47225How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0907Glimmer Score: 

          
Start: 295031Stop: 295561

          
Length: 531


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0907 translation of PA0907Homolog Bit Score 342.0

          
Other Homologs:  t_PA0907 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTCAAAGTACCGAGCAGGCGCTGGCCGTGGCCTACTGGATGTTCGAGCACCAGCCGGGACCGAAGTCG 
TCGACGGCGATGGTGATCGATGGCCTGCGCGAGCGCTTCGATCGCAGCTTCATCGAACACCTGCCCAGCGGT 
TTGAGTCTGCACGAATGGCAGGCCCAGGCGGTGATGACCGTGCGTTTCGCCCAGCGCCAGCTGGCTGCGCAC 
CCACTGGAGCTGGCGGTGGTGCGGGCCGAGTTCGCCCGCGGGCGGGATTTCGTCCTTGGCCTGGCGGCTTTG 
CGCGACTGGCTGAAGCCCGGGGCCGACCCGATCGAGCAGCGGGCAACCCTGGCCTTGCTGATGCGCATGTTC 
CGTCGTCCGCCGTCGAGCATCCGCGAGATCGAGCGACTCAGCGGCCTGTCGAAGAGCACCCTGCATCGCTGG 
GACAAGGAATGGCGCGAGCGGGTCGTCGCTTTGCTGCACCAGGCCTTGCAGCGACTGGAGGAGCCGATGGCG 
GAGGTGGGGATCGTGTGCGAGCGCTAA