ViewGene
Locus Name:
GeneID:
Location:

GeneID:4222
TrivialName: PA14_67640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67640
PAO1 Ortholog Locus:PA5122
Sequence Length:522
Protein Length:173
Start: 6043190
Stop: 6043711
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08507.1|AE004925_5 (AE004925) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 173/173 (100%), Positives = 173/173 (100%)
Sequence:
ATGCGCCTGATCACCAGCTGCCTGCTCCTGGCCGCCGCCCTGCCGGCCATGGCGCAGATCTACCAATACACC
GACGCCAACGGCAACAAGGTATTCACCAACCAGCCGCCAGACGGGGTGCAGGCGCAGACCGTCGAACTGCAG
CCGACCAATACCGTAGGAATCGACACGCCGGAAAAGTCCTCCGCGGGCAATGCCCCGGCCGCCGATAGCGAG
GCTGCCGCCTACGAGATCCTTGCCCTCAGCGACCTCCCCACGGAAGAggCGCTGCGCGCCAACAACGGCACC
TTCAACGTCAGCGTCAGCATCCGCCCGGCCCTGCACAGCGGCCACCAGTTGCAACTGGTGCTGGACGGCAAA
CCCTACGGCACGCCCAGCGGCGGCACCCGCTTCACCCTGCACGAGATCGACCGCGGCGACCACAGCCTCGCG
GTACAGGTACTCAACGGCGAACGGGTGCTGCAATCCAGCCCGCCGGTGACCTTCACCGTGCAGCGCGTGCAC
CTCGGGAAGAAGCGATGA
Translation:
MRLITSCLLLAAALPAMAQIYQYTDANGNKVFTNQPPDGVQAQTVELQPTNTVGIDTPEKSSAGNAPAADSE
AAAYEILALSDLPTEEALRANNGTFNVSVSIRPALHSGHQLQLVLDGKPYGTPSGGTRFTLHEIDRGDHSLA
VQVLNGERVLQSSPPVTFTVQRVHLGKKR*
AnnotationID:4228GeneID:4222
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 09:09:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5122
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8446




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25587




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4222
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6508
                           PA5122_tr
                           translation of PA5122
                           173
                           99.99
                           99.99
                           0
                           881.0
     

     
     
176982
                           gb|AAG08507.1|AE004925_5
                           (AE004925) hypothetical protein PA5122 [Pseudomonas aeruginosa PAO1]
                           173
                           99.99
                           99.99
                           0
                           881.0
     

     
     
176983
                           gb|AAO53900.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           181
                           50.82
                           66.29
                           9
                           470.0
     

     






      

          
GC ORFID: 47224How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5122Glimmer Score: 

          
Start: 5306875Stop: 5307396

          
Length: 522


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5122 translation of PA5122Homolog Bit Score 343.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6891 (ORF: BLASTX 182.0), t_PA5122 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGATCACCAGCTGCCTGCTCCTGGCCGCCGCCCTGCCGGCCATGGCGCAGATCTACCAATACACC 
GACGCCAACGGCAACAAGGTATTCACCAACCAGCCGCCAGACGGGGTGCAGGCGCAGACCGTCGAACTGCAG 
CCGACCAATACCGTAGGAATCGACACGCCGGAAAAGTCCTCCGCGGGCAATGCCCCGGCCGCCGATAGCGAG 
GCTGCCGCCTACGAGATCCTTGCCCTCAGCGACCTCCCCACGGAAGAggCGCTGCGCGCCAACAACGGCACC 
TTCAACGTCAGCGTCAGCATCCGCCCGGCCCTGCACAGCGGCCACCAGTTGCAACTGGTGCTGGACGGCAAA 
CCCTACGGCACGCCCAGCGGCGGCACCCGCTTCACCCTGCACGAGATCGACCGCGGCGACCACAGCCTCGCG 
GTACAGGTACTCAACGGCGAACGGGTGCTGCAATCCAGCCCGCCGGTGACCTTCACCGTGCAGCGCGTGCAC 
CTCGGGAAGAAGCGATGA