ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4220

TrivialName: PA14_09200

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_09200

PAO1 Ortholog Locus: PA4232

Sequence Length: 498

Protein Length: 165

Start: 779681

Stop: 780178

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07620.1|AE004840_6 (AE004840) single-stranded DNA-binding protein [Pseudomonas aeruginosa PAO1] Identities = 165/165 (100%), Positives = 165/165 (100%)

Sequence:

ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCC
AACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAA
CAGGAGCGCACCGAATGGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGC
AAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGC
TACACCACCGAGATCGTGGTCGACATCAACGGCAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGAT
TCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGCAGGCCCCGCAGCAACAGTCGCGTCCGGCCCCG
CAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGACGACGACATTCCGTTCTAA

Translation:

MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLR
KGSQVYVEGSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAP
QQQPAPQPAQDYDSFDDDIPF*

AnnotationID:8 GeneID:4220

AnnotatorUID: danlee

Modification Date/Time: 2006-02-03 18:06:09

Gene Name: ssb

Confidence Code: 1

GeneProduct: single-stranded DNA-binding protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction: DNA replication, recombination, modification and repair

Functional Category: (11) DNA replication, recombination, modification and repair

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:8442

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25583

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4220

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6506 PA4232_tr translation of PA4232 165 99.99 99.99 0 879.0

176725 gb|AAG07620.1|AE004840_6 (AE004840) single-stranded DNA-binding protein [Pseudomonas aeruginosa PAO1] 165 99.99 99.99 0 879.0

176726 emb|CAA83688.1| (Z32859) single-stranded DNA binding protein [Pseudomonas aeruginosa] 165 99.99 99.99 0 879.0

176727 gb|AAN66115.1|AE016239_10 (AE016775) single-stranded DNA-binding protein [Pseudomonas putida KT2440] 186 65.59 74.19 26 623.0

176728 gb|AAO54198.1| (AE016858) single-stranded DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 191 64.92 73.29 28 615.0

GC ORFID: `47222`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4232`	Glimmer Score:
Start: `4174256`	Stop: `4173759`
Length: `498`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA4232 translation of PA4232`	Homolog Bit Score `343.0`
Other Homologs: `psyr_15may02_Scaffold4_revised_gene5219 (ORF: BLASTX 234.0), t_PA4232 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCC AACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAA CAGGAGCGCACCGAATGGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGC AAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGC TACACCACCGAGATCGTGGTCGACATCAACGGCAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGAT TCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGCAGGCCCCGCAGCAACAGTCGCGTCCGGCCCCG CAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGACGACGACATTCCGTTCTAA