ViewGene
Locus Name:
GeneID:
Location:

GeneID:4219
TrivialName: PA14_14270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14270
PAO1 Ortholog Locus:PA3846
Sequence Length:543
Protein Length:180
Start: 1217815
Stop: 1218357
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07233.1|AE004802_2 (AE004802) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 178/180 (98%), Positives = 179/180 (99%)
Sequence:
ATGCTAATCCGCGCCGCAACCTCGACCCTGCTGGTGGTCGATATCCAGGAACGCCTGCTGCCGGCCATCGAC
GACGGCCCGGCGCTGGTCGAGTACAGCCAGTGGTTGTTGCGCGTGGCCCGCGCACTGGACGTGCCGGTGCTG
GCCAGCGAGCAGTACAGCAAGGGCCTGGGGCCGACGGTGGCGGCCCTGCGCGATGAGCTGGACGCCACGCAG
ATCCTCGAGAAGCTGGACTTCTCGGCCGCCGCCGACGGCGCCCTGCTGCGCGCGCCCGGCGGCGACCGCCGG
CAGTTCGTGGTTTGCGGCAGCGAGGCGCATGTCTGCGTGCTGCAGACCGTGCTCGACCTGCTTGGCCGTGGT
CGCGAAGTGTTCGTCGTGGAGGAGGCGATCGGCTCGCGGCGGCCGAGCGACAAGGCGCTGGCCGTGGAGCGG
ATGCGCCAGGCCGGGGCGATGATCGTGTCGCGGGAGATGGTCGCCTTCGAATGGATGGAACGCGCCGGCAGC
GACCGCTTCCGCGAGATCAGCCGCAACTTCATTCGCTGA
Translation:
MLIRAATSTLLVVDIQERLLPAIDDGPALVEYSQWLLRVARALDVPVLASEQYSKGLGPTVAALRDELDATQ
ILEKLDFSAAADGALLRAPGGDRRQFVVCGSEAHVCVLQTVLDLLGRGREVFVVEEAIGSRRPSDKALAVER
MRQAGAMIVSREMVAFEWMERAGSDRFREISRNFIR*
AnnotationID:4226GeneID:4219
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 22:10:19
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase, isochorismatase family
Cell Localization:()
Synonyms:PA3846
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG4044
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69400.1|AE016576_10 (AE016788) hydrolase, isochorismatase family [Pseudomonas putida
           KT2440]
          Length = 183

 Score =  154 bits (390), Expect = 2e-37
 Identities = 88/179 (49%), Positives = 112/179 (62%), Gaps = 1/179 (0%)








 
Structural Features:
KOG4044, Mitochondrial associated endoribonuclease MAR1 
(isochorismatase superfamily) 
CD-Length = 201 residues,  84.1% aligned
Score =  126 bits (318), Expect = 3e-30
Identities = 70/172 (40%), Positives = 94/172 (54%), Gaps = 6/172 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8440




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25581




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31716




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4219_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4219
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6505
                           PA3846_tr
                           translation of PA3846
                           180
                           98.88
                           99.44
                           0
                           879.0
     

     
     
176718
                           gb|AAG07233.1|AE004802_2
                           (AE004802) hypothetical protein PA3846 [Pseudomonas aeruginosa PAO1]
                           180
                           98.88
                           99.44
                           0
                           879.0
     

     
     
176719
                           gb|AAQ61295.1|
                           (AE016922) probable hydrolase, isochorismatase family [Chromobacterium violaceum ATCC 12472]
                           184
                           52.17
                           71.19
                           5
                           466.0
     

     
     
176720
                           gb|AAN69400.1|AE016576_10
                           (AE016788) hydrolase, isochorismatase family [Pseudomonas putida KT2440]
                           187
                           47.59
                           60.42
                           11
                           389.0
     

     
     
176723
                           emb|CAE10698.1|
                           (BX571661) AMIDASE-Related to nicotinamidase [Wolinella succinogenes]
                           183
                           43.71
                           62.29
                           5
                           343.0
     

     






      

          
GC ORFID: 47221How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3846Glimmer Score: 

          
Start: 3736123Stop: 3735581

          
Length: 543


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3846 translation of PA3846Homolog Bit Score 343.0

          
Other Homologs:  t_PA3846 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTAATCCGCGCCGCAACCTCGACCCTGCTGGTGGTCGATATCCAGGAACGCCTGCTGCCGGCCATCGAC 
GACGGCCCGGCGCTGGTCGAGTACAGCCAGTGGTTGTTGCGCGTGGCCCGCGCACTGGACGTGCCGGTGCTG 
GCCAGCGAGCAGTACAGCAAGGGCCTGGGGCCGACGGTGGCGGCCCTGCGCGATGAGCTGGACGCCACGCAG 
ATCCTCGAGAAGCTGGACTTCTCGGCCGCCGCCGACGGCGCCCTGCTGCGCGCGCCCGGCGGCGACCGCCGG 
CAGTTCGTGGTTTGCGGCAGCGAGGCGCATGTCTGCGTGCTGCAGACCGTGCTCGACCTGCTTGGCCGTGGT 
CGCGAAGTGTTCGTCGTGGAGGAGGCGATCGGCTCGCGGCGGCCGAGCGACAAGGCGCTGGCCGTGGAGCGG 
ATGCGCCAGGCCGGGGCGATGATCGTGTCGCGGGAGATGGTCGCCTTCGAATGGATGGAACGCGCCGGCAGC 
GACCGCTTCCGCGAGATCAGCCGCAACTTCATTCGCTGA