ViewGene

Locus Name:
GeneID:
Location:

GeneID:4217
TrivialName: PA14_21120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21120
PAO1 Ortholog Locus:PA3318
Sequence Length:501
Protein Length:166
Start: 1827112
Stop: 1826612
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06706.1|AE004754_2 (AE004754) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 165/166 (99%), Positives = 165/166 (99%)
Sequence:
ATGAACCGCTTTTCACTGCCCCGCCCCGACGCACGCCAGTGCGTCGCCGGCCTGGGTTTCTCCGCCCTTCTG
CTGCTGGCCTCCTCGGCCAACGCCGCCGCCTGCCGCGACATCACCAGCGTGCAGCAAAGCGCCGACGCCACG
CGCAATACCTCGATGGGCGGCCACGTGACCCAGCACATCTACGGGATGACGCCGCCGTCCGGCTCGTCGCAG
AAAGACAAGACCCTGTTCAAGTCGAGAGGCAACTACGACGCGGCCTGGCGCCAGTACGGATACATCGACAAT
CCGGTGGCCTGCAGCGGCAACAGCAAGTTCCAGGTGGTTTCCCTGGAGAAGCTGCACATGGGCAAGATCGAT
GCCTACTCCTGCAAGCAGGCCGACGGCCAGGGCGTCTGCACGCGCTGGGATACGTACATGGCCAAGGAGATT
TCGTACGGTTTCGTCCTGAAGGACGGCAAGTGGATCCTCAATACCCTCTACCCGGTTCCCCTCGACTAG
Translation:
MNRFSLPRPDARQCVAGLGFSALLLLASSANAAACRDITSVQQSADATRNTSMGGHVTQHIYGMTPPSGSSQ
KDKTLFKSRGNYDAAWRQYGYIDNPVACSGNSKFQVVSLEKLHMGKIDAYSCKQADGQGVCTRWDTYMAKEI
SYGFVLKDGKWILNTLYPVPLD*
AnnotationID:4224GeneID:4217
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:14
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3318
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8436
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25577
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4217

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6503 PA3318_tr translation of PA3318 166 99.39 99.39 0 880.0
176711 gb|AAG06706.1|AE004754_2 (AE004754) hypothetical protein PA3318 [Pseudomonas aeruginosa PAO1] 166 99.39 99.39 0 880.0
GC ORFID: 47219How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3318Glimmer Score:
Start: 3126820Stop: 3127320
Length: 501
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3318 translation of PA3318Homolog Bit Score 343.0
Other Homologs: t_PA3318 (ORF: GLIMMER)
GC ORF Sequence
ATGAACCGCTTTTCACTGCCCCGCCCCGACGCACGCCAGTGCGTCGCCGGCCTGGGTTTCTCCGCCCTTCTG
CTGCTGGCCTCCTCGGCCAACGCCGCCGCCTGCCGCGACATCACCAGCGTGCAGCAAAGCGCCGACGCCACG
CGCAATACCTCGATGGGCGGCCACGTGACCCAGCACATCTACGGGATGACGCCGCCGTCCGGCTCGTCGCAG
AAAGACAAGACCCTGTTCAAGTCGAGAGGCAACTACGACGCGGCCTGGCGCCAGTACGGATACATCGACAAT
CCGGTGGCCTGCAGCGGCAACAGCAAGTTCCAGGTGGTTTCCCTGGAGAAGCTGCACATGGGCAAGATCGAT
GCCTACTCCTGCAAGCAGGCCGACGGCCAGGGCGTCTGCACGCGCTGGGATACGTACATGGCCAAGGAGATT
TCGTACGGTTTCGTCCTGAAGGACGGCAAGTGGATCCTCAATACCCTCTACCCGGTTCCCCTCGACTAG