ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4216

TrivialName: PA14_28560

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_28560

PAO1 Ortholog Locus: PA2750

Sequence Length: 519

Protein Length: 172

Start: 2462339

Stop: 2461821

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06138.1|AE004703_4 (AE004703) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 169/172 (98%), Positives = 169/172 (98%)

Sequence:

ATGATCTTCCGCACCCTCGCCCTGTTGCCGCTCTGCGCCGCCCTGGCGTTCGCCGCCGACGCCGGGGAGCGC
CGCTTCGACTGCACGGTGGTGGCGATACACGACGACGCCAGCCTGGGCTGCCGCCTGCCCGGCGCGAACAAG
GCACTGCGCATCCAGCTCAATGCCGTCGAGCTACCGGCCGCCGAGCCCTGGCGTCGGCGCGCCCGGGAAGCC
CTGGAAGACATGCTGCTCGGCAAATCGGCGACCATCCGCGAGCAAGGCCGCGACGCGCACTTCCGCATCCTC
GGCGCGGCCTGGGTGACCCCGGCCGACTGCCCCACCTGCGGACATACCCTGGATGCCGGGCTGGCCCTGCTG
ACCATTGGCCTGGCCAGTTGGCGCGACGCGCCGGACAGCGGCCAGACGGCCGAGGCGCGCGGCCAGTACCGG
TTCGCCGAGGAAGAAGCACGGGCGCGCAAGGCTGGCCAGTGGGGACCGCGCGACGCCGCTCCTACAGATGGA
TCTCCGCGAACTTGA

Translation:

MIFRTLALLPLCAALAFAADAGERRFDCTVVAIHDDASLGCRLPGANKALRIQLNAVELPAAEPWRRRAREA
LEDMLLGKSATIREQGRDAHFRILGAAWVTPADCPTCGHTLDAGLALLTIGLASWRDAPDSGQTAEARGQYR
FAEEEARARKAGQWGPRDAAPTDGSPRT*

AnnotationID:4223 GeneID:4216

AnnotatorUID: diggins

Modification Date/Time: 2005-04-05 08:08:58

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2750

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name: putative nuclease

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): DNA replication, recombination and repair

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:8434

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25575

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36285

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4216_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4216

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6502 PA2750_tr translation of PA2750 172 98.25 98.25 0 879.0

176710 gb|AAG06138.1|AE004703_4 (AE004703) hypothetical protein PA2750 [Pseudomonas aeruginosa PAO1] 172 98.25 98.25 0 879.0

GC ORFID: `47218`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2750`	Glimmer Score:
Start: `2491587`	Stop: `2492105`
Length: `519`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2750 translation of PA2750`	Homolog Bit Score `343.0`
Other Homologs: `t_PA2750 (ORF: GLIMMER)`
GC ORF Sequence
ATGATCTTCCGCACCCTCGCCCTGTTGCCGCTCTGCGCCGCCCTGGCGTTCGCCGCCGACGCCGGGGAGCGC CGCTTCGACTGCACGGTGGTGGCGATACACGACGACGCCAGCCTGGGCTGCCGCCTGCCCGGCGCGAACAAG GCACTGCGCATCCAGCTCAATGCCGTCGAGCTACCGGCCGCCGAGCCCTGGCGTCGGCGCGCCCGGGAAGCC CTGGAAGACATGCTGCTCGGCAAATCGGCGACCATCCGCGAGCAAGGCCGCGACGCGCACTTCCGCATCCTC GGCGCGGCCTGGGTGACCCCGGCCGACTGCCCCACCTGCGGACATACCCTGGATGCCGGGCTGGCCCTGCTG ACCATTGGCCTGGCCAGTTGGCGCGACGCGCCGGACAGCGGCCAGACGGCCGAGGCGCGCGGCCAGTACCGG TTCGCCGAGGAAGAAGCACGGGCGCGCAAGGCTGGCCAGTGGGGACCGCGCGACGCCGCTCCTACAGATGGA TCTCCGCGAACTTGA