ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4215

TrivialName: PA14_28930

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_28930

PAO1 Ortholog Locus: PA2724

Sequence Length: 543

Protein Length: 180

Start: 2503392

Stop: 2502850

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06112.1|AE004700_8 (AE004700) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 171/176 (97%), Positives = 171/176 (97%)

Sequence:

ATGAACGCCCACCCCTACCTGCTCCGTCTCGCCGCCGGCCTGGCGCTGCTCCTGCCGGCCGCCTGCACGTCC
CCTGCCCCGCCAGCACCGAACCTGACCGAGCTGTTCGCCGACGCCCTGCACTGCCGCGGCGACTTCCCCGAC
GCCCGCGCCCGCGCAACCGCCGAGCGCCTGCGCGCCGAGGGCGTCGAAGTGCTGGATCGCGCGCCCGGCGAG
ACCCTCGACCTGCTCTACCGCTTCGCCACCCCGCTGCGCATCGACGGCAGCCTGGTGAACGCGGTGCGGGTA
CGCGGCGACAGCGGCGTGCTGGTGATGGCCTACGCCGAGGGCGACCTCGAAGACTTCGCCCGGCGCCAGGGC
GCGACGCCGCACCCGGCGGAACGCGCCGCGCTGGATGGTTTCGGCGAGCTGGAGGTGCTCTACAGCCGGCCG
CTGTCGCCGCGTCCCGGCCTCGACGAAAGCCCGCCGCGCCTGGTGATCGGGCGCGGGATCGAGGCGGCGGCG
CAGGCGTTCCGCTGGGGCTGCCGGAGCTACGACGGTTGA

Translation:

MNAHPYLLRLAAGLALLLPAACTSPAPPAPNLTELFADALHCRGDFPDARARATAERLRAEGVEVLDRAPGE
TLDLLYRFATPLRIDGSLVNAVRVRGDSGVLVMAYAEGDLEDFARRQGATPHPAERAALDGFGELEVLYSRP
LSPRPGLDESPPRLVIGRGIEAAAQAFRWGCRSYDG*

AnnotationID:4222 GeneID:4215

AnnotatorUID: diggins

Modification Date/Time: 2005-04-05 07:07:45

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA2724

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:8432

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25573

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4215

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6501 PA2724_tr translation of PA2724 180 95.00 95.00 1 878.0

176709 gb|AAG06112.1|AE004700_8 (AE004700) hypothetical protein PA2724 [Pseudomonas aeruginosa PAO1] 180 95.00 95.00 1 878.0

GC ORFID: `47217`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2724`	Glimmer Score:
Start: `2450534`	Stop: `2451076`
Length: `543`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2724 translation of PA2724`	Homolog Bit Score `343.0`
Other Homologs: `t_PA2724 (ORF: GLIMMER)`
GC ORF Sequence
ATGAACGCCCACCCCTACCTGCTCCGTCTCGCCGCCGGCCTGGCGCTGCTCCTGCCGGCCGCCTGCACGTCC CCTGCCCCGCCAGCACCGAACCTGACCGAGCTGTTCGCCGACGCCCTGCACTGCCGCGGCGACTTCCCCGAC GCCCGCGCCCGCGCAACCGCCGAGCGCCTGCGCGCCGAGGGCGTCGAAGTGCTGGATCGCGCGCCCGGCGAG ACCCTCGACCTGCTCTACCGCTTCGCCACCCCGCTGCGCATCGACGGCAGCCTGGTGAACGCGGTGCGGGTA CGCGGCGACAGCGGCGTGCTGGTGATGGCCTACGCCGAGGGCGACCTCGAAGACTTCGCCCGGCGCCAGGGC GCGACGCCGCACCCGGCGGAACGCGCCGCGCTGGATGGTTTCGGCGAGCTGGAGGTGCTCTACAGCCGGCCG CTGTCGCCGCGTCCCGGCCTCGACGAAAGCCCGCCGCGCCTGGTGATCGGGCGCGGGATCGAGGCGGCGGCG CAGGCGTTCCGCTGGGGCTGCCGGAGCTACGACGGTTGA