ViewGene
Locus Name:
GeneID:
Location:

GeneID:4214
TrivialName: PA14_48880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48880
PAO1 Ortholog Locus:
Sequence Length:1017
Protein Length:338
Start: 4346203
Stop: 4345187
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04117.1|AE004508_2 (AE004508) probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
Identities = 171/325 (52%), Positives = 230/325 (70%)
Sequence:
ATGGCGATCACCAAGCTTGAGGATGGCCGCTGGCTGGCCGACGTTGAGCCGATCAAGGGCAAGCGTTTTAGG
AAGCGTTTCAAGACCAAGGGCGAAGCCCAGCGGTTCGAGGCGATGGTGCGGACGAAGCATGCGCGACAGCGG
GAGTGGAACCCCGTTCAGCAAGATAAGCGACTGCTGTCGGAACTTATAGAGCGTTGGTATGAATTGCATGGG
CACTCGATTACCAGCGGGAGGCGTCGTAAGAATTTGCTATTGCTGATCGCGTCTCGCCTGGGTGACCCGGTG
GGGCAGAGGTTCACCACTGCTGATCTGGTCGCGTTCAGGAAGCGTGAGTTGGAGGAGGGCGCCTTACCTAGG
TCTATAAACGTTCGCTATTCGTATCTGAAAACAGTATTCACCGAGCTTCGTAGGCTCGGCGATATCGACTAT
CCGAATCCTTTGGATCGTCTCAAGCCGTTGAAGCCTCAACAGTCGGTTGTATCGTTCCTGTCTAAGGATCAG
GTAGCGGTGTTGGTGTCAGCGCTCCGGGACTATTCGACCTTTCCCCACTTGGCATTGATTTCAGAGGTCTGC
TTGGCGACGGGGGCTCGCTGGTCGGAAGCGCAAGGGTTGACTCTGCCCATGGTCCGGGATGGATCGGTGGTC
TTCTCCAATACCAAATCAAAGCGTGTTCGATCCGTACCAATCTCGACAGACTTGCAGGCTCGACTTGAGAAA
TATTTCGCCGGTCGGAATCGCTTTCCCTCTTGTCGGGAGGCGTTTGCACGGATGGTGAAGCGTTGCGGTATC
GTATTGCCAAGAGGACAGTGCACCCATGTGCTACGCCATACGTTCGCTTCCCACTTCATGATGAACGGTGGA
AACATCCTGGCGCTGAAAGAGATTCTTGGGCATTCGTCGCTGAACATGACCATGCGCTATGCGCATTTGTCG
CCGGAGTACCTGCGGGACGCTATTCGACTCAACCCGCTGGCGGATTTCGACAGTTCTTCGACACTTGTCGAG
ACGTCCTAG
Translation:
MAITKLEDGRWLADVEPIKGKRFRKRFKTKGEAQRFEAMVRTKHARQREWNPVQQDKRLLSELIERWYELHG
HSITSGRRRKNLLLLIASRLGDPVGQRFTTADLVAFRKRELEEGALPRSINVRYSYLKTVFTELRRLGDIDY
PNPLDRLKPLKPQQSVVSFLSKDQVAVLVSALRDYSTFPHLALISEVCLATGARWSEAQGLTLPMVRDGSVV
FSNTKSKRVRSVPISTDLQARLEKYFAGRNRFPSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGG
NILALKEILGHSSLNMTMRYAHLSPEYLRDAIRLNPLADFDSSSTLVETS*
AnnotationID:4221GeneID:4214
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 09:09:12
Gene Name:
Confidence Code:3
GeneProduct:putative bacteriophage integrase
Cell Localization:()
Synonyms:intT
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00797,cd00798,pfam00589
Secondary Functional Category(ies):DNA replication, recombination and repair
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO70923.1| (AE016845) probable bacteriophage integrase [Salmonella enterica
           subsp. enterica serovar Typhi Ty2]
          Length = 350

 Score =  264 bits (675), Expect = 5e-70
 Identities = 143/342 (41%), Positives = 208/342 (60%), Gaps = 16/342 (4%)

>gb|AAN79405.1|AE016758_9 (AE016758) Integrase for prophage [Escherichia coli CFT073]
          Length = 343

 Score =  264 bits (674), Expect = 7e-70
 Identities = 143/343 (41%), Positives = 209/343 (60%), Gaps = 16/343 (4%)








 
Structural Features:
cd00797, HP1_INT_C, Phage HP1 integrase, C-terminal catalytic domain.
CD-Length = 158 residues, 100.0% aligned
Score =  179 bits (455), Expect = 5e-46

cd00798, INT_XerDC, XerD and XerC integrases, DNA breaking-rejoining 
enzymes, N- and C-terminal domains.
CD-Length = 284 residues,  98.9% aligned
Score =  102 bits (256), Expect = 6e-23

pfam00589, Phage_integrase, Phage integrase family.
CD-Length = 175 residues, 100.0% aligned
Score = 97.0 bits (241), Expect = 3e-21






   
Genomic Context:






   
Comment:


















    ReferenceID:8430




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25571




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37583




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4214_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4214
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6500
                           PA0728_tr
                           translation of PA0728
                           338
                           50.59
                           68.04
                           11
                           879.0
     

     
     
176698
                           gb|AAG04117.1|AE004508_2
                           (AE004508) probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
                           338
                           50.59
                           68.04
                           11
                           879.0
     

     
     
176706
                           dbj|BAB36040.1|
                           (AP002559) putative integrase [Escherichia coli O157:H7]
                           348
                           42.52
                           56.60
                           25
                           643.0
     

     
     
176705
                           gb|AAG56898.1|AE005412_8
                           (AE005412) integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933]
                           348
                           42.52
                           56.60
                           25
                           643.0
     

     
     
176699
                           gb|AAL21625.1|
                           (AE008824) Fels-2 prophage protein [phage Fels-2] [Salmonella typhimurium LT2]
                           354
                           42.09
                           59.03
                           29
                           694.0
     

     






      

          
GC ORFID: 47216How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0728Glimmer Score: 

          
Start: 607705Stop: 608721

          
Length: 1017


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0728 translation of PA0728Homolog Bit Score 343.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCGATCACCAAGCTTGAGGATGGCCGCTGGCTGGCCGACGTTGAGCCGATCAAGGGCAAGCGTTTTAGG 
AAGCGTTTCAAGACCAAGGGCGAAGCCCAGCGGTTCGAGGCGATGGTGCGGACGAAGCATGCGCGACAGCGG 
GAGTGGAACCCCGTTCAGCAAGATAAGCGACTGCTGTCGGAACTTATAGAGCGTTGGTATGAATTGCATGGG 
CACTCGATTACCAGCGGGAGGCGTCGTAAGAATTTGCTATTGCTGATCGCGTCTCGCCTGGGTGACCCGGTG 
GGGCAGAGGTTCACCACTGCTGATCTGGTCGCGTTCAGGAAGCGTGAGTTGGAGGAGGGCGCCTTACCTAGG 
TCTATAAACGTTCGCTATTCGTATCTGAAAACAGTATTCACCGAGCTTCGTAGGCTCGGCGATATCGACTAT 
CCGAATCCTTTGGATCGTCTCAAGCCGTTGAAGCCTCAACAGTCGGTTGTATCGTTCCTGTCTAAGGATCAG 
GTAGCGGTGTTGGTGTCAGCGCTCCGGGACTATTCGACCTTTCCCCACTTGGCATTGATTTCAGAGGTCTGC 
TTGGCGACGGGGGCTCGCTGGTCGGAAGCGCAAGGGTTGACTCTGCCCATGGTCCGGGATGGATCGGTGGTC 
TTCTCCAATACCAAATCAAAGCGTGTTCGATCCGTACCAATCTCGACAGACTTGCAGGCTCGACTTGAGAAA 
TATTTCGCCGGTCGGAATCGCTTTCCCTCTTGTCGGGAGGCGTTTGCACGGATGGTGAAGCGTTGCGGTATC 
GTATTGCCAAGAGGACAGTGCACCCATGTGCTACGCCATACGTTCGCTTCCCACTTCATGATGAACGGTGGA 
AACATCCTGGCGCTGAAAGAGATTCTTGGGCATTCGTCGCTGAACATGACCATGCGCTATGCGCATTTGTCG 
CCGGAGTACCTGCGGGACGCTATTCGACTCAACCCGCTGGCGGATTTCGACAGTTCTTCGACACTTGTCGAG 
ACGTCCTAG