ViewGene
Locus Name:
GeneID:
Location:

GeneID:4213
TrivialName: PA14_50650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50650
PAO1 Ortholog Locus:PA1062
Sequence Length:522
Protein Length:173
Start: 4499976
Stop: 4499455
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04451.1|AE004538_3 (AE004538) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 171/173 (98%), Positives = 171/173 (98%)
Sequence:
ATGCACCGTTTGCGAGCTGCCGAAACCGGCGATATCGAGGCCATGACCGACCTGCTGCTGAGCCACGGGCCG
AATCCCTGGAACCATCTGCCGGAGGAGGGGGGGCGTGCGCATCTGCGAGCCATCGCCGACGGCGAGGTACGG
GCCGTCCTGGCCGAGCGCGACGATCGGCTGCTGGGGTTCGCCAGCTTCCGCCGCACCGAGGATTTCGCCCAT
TACCAGCCGCAGCGTGCCGATGCGCCGCGGGCCTACATCTGCGAGGCGGTAGTGCATCCGGCGGCGGCCGGC
CAGGGGCTCGGCAGCGCGTTGCTGGAGGCGGTGCTGGCCCAACTGGCCGACGAAGGCATCGAGGATGTCTAT
ATCGATCGTCACGAAGAGAACCTGGCGTCGGCGGGAATGATGCGCAAGGCCGGCTTCGTCGAGCTGGAGACC
TACGCCGATCCGGCGCGGCGGCCGAACGGCTCGGGGCGCTCGACGGTGTGCCATCGCAATCTTTCCCTCCAG
CGCAGAGCCGTGCGATGA
Translation:
MHRLRAAETGDIEAMTDLLLSHGPNPWNHLPEEGGRAHLRAIADGEVRAVLAERDDRLLGFASFRRTEDFAH
YQPQRADAPRAYICEAVVHPAAAGQGLGSALLEAVLAQLADEGIEDVYIDRHEENLASAGMMRKAGFVELET
YADPARRPNGSGRSTVCHRNLSLQRRAVR*
AnnotationID:4220GeneID:4213
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 16:04:14
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1062
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. 
This family contains proteins with N-acetyltransferase functions.
       CD-Length = 82 residues,  98.8% aligned
       Score = 55.6 bits (134), Expect = 3e-09






   
Genomic Context:






   
Comment:


















    ReferenceID:8428




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25569




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4213
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6499
                           PA1062_tr
                           translation of PA1062
                           173
                           98.84
                           98.84
                           0
                           881.0
     

     
     
176697
                           gb|AAG04451.1|AE004538_3
                           (AE004538) hypothetical protein PA1062 [Pseudomonas aeruginosa PAO1]
                           173
                           98.84
                           98.84
                           0
                           881.0
     

     






      

          
GC ORFID: 47215How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1062Glimmer Score: 

          
Start: 453932Stop: 454453

          
Length: 522


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1062 translation of PA1062Homolog Bit Score 343.0

          
Other Homologs:  t_PA1062 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACCGTTTGCGAGCTGCCGAAACCGGCGATATCGAGGCCATGACCGACCTGCTGCTGAGCCACGGGCCG 
AATCCCTGGAACCATCTGCCGGAGGAGGGGGGGCGTGCGCATCTGCGAGCCATCGCCGACGGCGAGGTACGG 
GCCGTCCTGGCCGAGCGCGACGATCGGCTGCTGGGGTTCGCCAGCTTCCGCCGCACCGAGGATTTCGCCCAT 
TACCAGCCGCAGCGTGCCGATGCGCCGCGGGCCTACATCTGCGAGGCGGTAGTGCATCCGGCGGCGGCCGGC 
CAGGGGCTCGGCAGCGCGTTGCTGGAGGCGGTGCTGGCCCAACTGGCCGACGAAGGCATCGAGGATGTCTAT 
ATCGATCGTCACGAAGAGAACCTGGCGTCGGCGGGAATGATGCGCAAGGCCGGCTTCGTCGAGCTGGAGACC 
TACGCCGATCCGGCGCGGCGGCCGAACGGCTCGGGGCGCTCGACGGTGTGCCATCGCAATCTTTCCCTCCAG 
CGCAGAGCCGTGCGATGA