ViewGene
Locus Name:
GeneID:
Location:

GeneID:4212
TrivialName: PA14_73200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73200
PAO1 Ortholog Locus:PA5551
Sequence Length:510
Protein Length:169
Start: 6519568
Stop: 6519059
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08936.1|AE004967_7 (AE004967) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 164/169 (97%), Positives = 165/169 (97%)
Sequence:
ATGCCGAAGCCTGCGAAATGGATCGTGCTGGGGCTGCTCATAGCCGGGGCGGTGCTACCCGAATGGCCGCGG
ATACCCGTCGAAGGCGCCAGTGCCCGCGACTGGAATCCGCGAACCTTCTGGTTCGAGCCCTGGGGGCGCTCC
GGAGTGCACAAGGGCATCGACATCTTCGCCCGCAGCGGCACCCCCGTACGCTCCGCCAGCTACGGCCTGGTG
CTCTATCGCGGGGAGATCGCCCTCGGCGGCAAGGTCGTCCTGGTGCTGGCGCCCAAGTGGCGCCTGCATTAC
TACGCCCATCTCGATAGCCTCGACGCCTATCCGGGCCAGCCGGTCCTCGCCGGTTCCCGCCTGGGTGCGGTC
GGAACCACCGGCAACGCGCGCGGCAAGCCGGCCCACCTGCACTACGCGATCATCACCTTGCTGCCCTATCCC
TGGCTGGCCGACGCCAGCACCCAGGGTTGGAAGAAAATGTTCTACCTCGATCCCAATACGGTGCTGCCGAGC
CGATGA
Translation:
MPKPAKWIVLGLLIAGAVLPEWPRIPVEGASARDWNPRTFWFEPWGRSGVHKGIDIFARSGTPVRSASYGLV
LYRGEIALGGKVVLVLAPKWRLHYYAHLDSLDAYPGQPVLAGSRLGAVGTTGNARGKPAHLHYAIITLLPYP
WLADASTQGWKKMFYLDPNTVLPSR*
AnnotationID:4219GeneID:4212
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 18:06:50
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0739
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8426




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17037




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA5551_CDS.cgi


    		




 
URL:

















    ReferenceID:25567




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4212
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6498
                           PA5551_tr
                           translation of PA5551
                           169
                           97.04
                           97.63
                           0
                           883.0
     

     
     
176694
                           gb|AAG08936.1|AE004967_7
                           (AE004967) hypothetical protein PA5551 [Pseudomonas aeruginosa PAO1]
                           169
                           97.04
                           97.63
                           0
                           883.0
     

     
     
176695
                           gb|AAN57387.1|AE015875_3
                           (AE015875) peptidase, M23/M37 family [Shewanella oneidensis MR-1]
                           172
                           51.16
                           69.76
                           5
                           484.0
     

     
     
176696
                           gb|AAN48692.1|AE011329_1
                           (AE011329) Peptidase family M23/M37 [Leptospira interrogans serovar lai str. 56601]
                           176
                           48.29
                           65.90
                           10
                           460.0
     

     






      

          
GC ORFID: 47214How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5551Glimmer Score: 

          
Start: 5783257Stop: 5782748

          
Length: 510


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5551 translation of PA5551Homolog Bit Score 344.0

          
Other Homologs:  t_PA5551 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGAAGCCTGCGAAATGGATCGTGCTGGGGCTGCTCATAGCCGGGGCGGTGCTACCCGAATGGCCGCGG 
ATACCCGTCGAAGGCGCCAGTGCCCGCGACTGGAATCCGCGAACCTTCTGGTTCGAGCCCTGGGGGCGCTCC 
GGAGTGCACAAGGGCATCGACATCTTCGCCCGCAGCGGCACCCCCGTACGCTCCGCCAGCTACGGCCTGGTG 
CTCTATCGCGGGGAGATCGCCCTCGGCGGCAAGGTCGTCCTGGTGCTGGCGCCCAAGTGGCGCCTGCATTAC 
TACGCCCATCTCGATAGCCTCGACGCCTATCCGGGCCAGCCGGTCCTCGCCGGTTCCCGCCTGGGTGCGGTC 
GGAACCACCGGCAACGCGCGCGGCAAGCCGGCCCACCTGCACTACGCGATCATCACCTTGCTGCCCTATCCC 
TGGCTGGCCGACGCCAGCACCCAGGGTTGGAAGAAAATGTTCTACCTCGATCCCAATACGGTGCTGCCGAGC 
CGATGA