ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4211

TrivialName: PA14_34640

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_34640

PAO1 Ortholog Locus: PA2321

Sequence Length: 522

Protein Length: 173

Start: 3077592

Stop: 3077071

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05709.1|AE004658_3 (AE004658) gluconokinase [Pseudomonas aeruginosa PAO1] Identities = 171/173 (98%), Positives = 171/173 (98%)

Sequence:

ATGCATCCATCCCTCCAAGCCCTGGTCATCATGGGTGTCGCCGGTTGCGGCAAGTCCAGCGTCAGCCAGGCC
CTCTGCCAGCGCAGCGGCGCCCACGGCATCGAAGGCGACAGCTTCCATCCCGCCGCCAACATCCGCAAGATG
AGCGCCGGCATCCCCCTCACCGACGACGACCGCGCCGGCTGGCTGGACACCCTCGCCGAGCAGCTGCGCCAG
GCGGTGGCCGCCGGCAAGCTGCCGGTACTGACCTGTTCCGCCCTCAAGCGCGCCTACCGCGACCGGTTGCGC
CGCGCGGTGCCCGGCCTCGGCATCGTCTACCTGGAACTGACCCCGGCGGTCGCCGCCGAGCGCGTCGCCCAG
CGCCCCGGCCACTTCATGCCGGCGACCCTGATCGACAGCCAGTTCGCCGCCCTCGAGCCGCCGCTCGACGAA
CCCCTGACCCTGCGCCTGGACGCCACCCTGCCGGTGGAATGCCTGGCGCAGGCCACCCACGCCTGGTGGCTG
GAGCACGCCGCCGCCTGA

Translation:

MHPSLQALVIMGVAGCGKSSVSQALCQRSGAHGIEGDSFHPAANIRKMSAGIPLTDDDRAGWLDTLAEQLRQ
AVAAGKLPVLTCSALKRAYRDRLRRAVPGLGIVYLELTPAVAAERVAQRPGHFMPATLIDSQFAALEPPLDE
PLTLRLDATLPVECLAQATHAWWLEHAAA*

AnnotationID:4218 GeneID:4211

AnnotatorUID: danlee

Modification Date/Time: 2004-02-05 16:04:52

Gene Name:

Confidence Code: 2

GeneProduct: gluconokinase

Cell Localization: ()

Synonyms: gnuK, gntK, gntV

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (5) Carbon compound catabolism

Alternate Gene Product Name: gluconate kinase

Functional Category Confidence Code: 5

COGs: COG3265

Secondary Functional Category(ies): Energy metabolism

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:8424

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17023

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI - Conserved Domain Search (BLASTP).

Reference Type: Blast (text/plain)

Data: PA2321_CDS.cgi

URL:

ReferenceID:25565

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4211

Identity:

10%

20%

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40%

50%

60%

70%

80%

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100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6497 PA2321_tr translation of PA2321 173 98.84 98.84 0 883.0

176664 gb|AAG05709.1|AE004658_3 (AE004658) gluconokinase [Pseudomonas aeruginosa PAO1] 173 98.84 98.84 0 883.0

176665 gb|AAD01802.1| (AF026470) gluconate kinase [Pseudomonas aeruginosa] 173 98.84 98.84 0 883.0

176666 gb|AAN69018.1|AE016534_1 (AE016786) gluconokinase [Pseudomonas putida KT2440] 181 61.87 71.82 10 558.0

176667 gb|AAO57038.1| (AE016868) gluconokinase [Pseudomonas syringae pv. tomato str. DC3000] 174 56.89 69.54 13 517.0

GC ORFID: `47213`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2321`	Glimmer Score:
Start: `1876324`	Stop: `1876845`
Length: `522`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2321 translation of PA2321`	Homolog Bit Score `344.0`
Other Homologs: `psyr_15may02_Scaffold9_revised_gene8170 (ORF: BLASTX 209.0), t_PA2321 (ORF: GLIMMER)`
GC ORF Sequence
ATGCATCCATCCCTCCAAGCCCTGGTCATCATGGGTGTCGCCGGTTGCGGCAAGTCCAGCGTCAGCCAGGCC CTCTGCCAGCGCAGCGGCGCCCACGGCATCGAAGGCGACAGCTTCCATCCCGCCGCCAACATCCGCAAGATG AGCGCCGGCATCCCCCTCACCGACGACGACCGCGCCGGCTGGCTGGACACCCTCGCCGAGCAGCTGCGCCAG GCGGTGGCCGCCGGCAAGCTGCCGGTACTGACCTGTTCCGCCCTCAAGCGCGCCTACCGCGACCGGTTGCGC CGCGCGGTGCCCGGCCTCGGCATCGTCTACCTGGAACTGACCCCGGCGGTCGCCGCCGAGCGCGTCGCCCAG CGCCCCGGCCACTTCATGCCGGCGACCCTGATCGACAGCCAGTTCGCCGCCCTCGAGCCGCCGCTCGACGAA CCCCTGACCCTGCGCCTGGACGCCACCCTGCCGGTGGAATGCCTGGCGCAGGCCACCCACGCCTGGTGGCTG GAGCACGCCGCCGCCTGA