ViewGene

Locus Name:
GeneID:
Location:

GeneID: 421

TrivialName: PA14_16360

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_16360

PAO1 Ortholog Locus: PA3713

Sequence Length: 1863

Protein Length: 620

Start: 1399846

Stop: 1397984

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07100.1|AE004790_5 (AE004790) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 619/620 (99%), Positives = 619/620 (99%)

Sequence:

ATGACCATCTCCCGCCGCGACTTCCTGAACGGCGTAGCCCTGACCATCGCCGCAGGCCTGACCCCCGCCGAG
ATCCTCCGCGCTGCCCCCGGCGGCCGCTACTATCCGCCCGCGCTCACCGGCCTGCGCGGTAGCCATCCGGGC
GCCTTCGAAGTCGCACACCAGATGGGCTGGGAGAAGAAGACCTTCGATGTCGACCACCTGCCGATCGAAGAG
GAATACGACCTGGTGGTGGTCGGCGGCGGCATCAGCGGCCTCGCCGCCGCCTGGTTCTATCGCGAACGGCAC
CCCGCGGCGCGCATCCTCGTCATCGAGAACCACGACGACTTCGGCGGCCATGCCAAGCGCAACGAATTCCAG
GCCGGCGGGCGCACCATCCTCGGCTACGGCGGCAGCGAGTCGCTGCAATCGCCGAACGCCCTCTACAGCGAA
GACGCCAAACACCTGCTGAAACGCCTGGGCGTCGAGCTCAAGCGCTTCGAGACAGCCTTCGACACCGACTTC
TACCCCGGCCTGGGCCTGTCCCGCGCGGTGTTCTTCGACAAGGCCAGCTTCGGCGTGGACAAGCTGGTCAGC
GGCGACCCGACGCCGATGGTTGCCGACGAGGTCCCCCGCGATCGTCTCAATGCCCGCTCCTGGCGCGCCTTC
ATCGGCGATTTCCCGCTGAGCCGCGAAGACCGGGAGGCGCTCATCGCGCTGTACGAATCACCTCGCGACTAT
CTTGCCGGCAAGAGCGTGGAAGAAAAGGAAACCTACCTGGCGAAGACCAGCTACCGCGACTACCTGCTCAAG
AACGTCGGGCTCTCGGAAACCTCGGTGAAGTACTTCCAGGGCCGCAGCAACGACTTCTCTGCCCTCGGCGCC
GACGCCCTGCCGGCGGCTGACGCATACGCCGCCGGCTTCCCCGGCTTCGACGCCCTCGGCCTGCCGCAACCC
AGCGAGGAGGCCCAGGCGGAAATGGACGAGCCGTACATCTACCATTTCCCCGACGGCAACGCCTCGCTGGCT
CGGCTCATGGTGCGCGACCTGATCCCCGCGGTGGCGCCGGGCCGAGGCATGGAGGACATCGTCATGGCCCGC
TTCGACTACTCGAAGCTGGACCTCGCCGGGCATCCGGTGCGCCTGCGCCTGAACAGCACCGCCGTCAGCGTG
CGCAACCGCGCCGGCGGCGTCGATGTCGGCTACAGCCGCGCCGGCCGCCTGCACCGGGTACGCGGCAAACAC
TGCGTGATGGCCTGCTACAACATGATGGTGCCGTACCTGCTGCGCGACCTCTCCGAGGAGCAGGCCCACGCG
CTGAGCCAGAACGTCAAGTTCCCGCTGGTGTACACCAAGGTATTGCTGCGCAACTGGCAGGCCTGGAAGACC
CTCGGCATCCACGAGATCTACGCGCCGACCCTGCCCTACTCGCGGATCAAGCTGGACTTCCCGGTCGACCTC
GGCAGCTACCGGCACCCGCGCGACCCGCGGCAGCCGATCGGCGTGCACATGGTCTACGTGCCGACCACCCCG
AACGCCGGCATGGACGCCCGCACCCAGGCTCGCGTAGGCCGCAGCAAGCTCTACGCGATGAGCTTCGAGCAA
CTGGAAAAGGACATCCGCGACCAGCTCCAGGCCATGCTCGGCCCGGCCGGCTTCGACCACCGTCGCGACATC
ACCGGCATCACCGTGAACCGCTGGTCGCACGGCTACTCCTACTTCATGAATACCCTCTACGACGACGAGGCG
GAAAGCGAAGCGCTGATGGAACTGGCGCGAAGCAAGGTCGGCAATGTCACCATCGCCAACTCGGATGCGGCC
TGGGATGCCTACGCCCATGCCGCCATCGACCAGGCGGTGCGGGCAGTCCGCGAATTGGGTTGA

Translation:

MTISRRDFLNGVALTIAAGLTPAEILRAAPGGRYYPPALTGLRGSHPGAFEVAHQMGWEKKTFDVDHLPIEE
EYDLVVVGGGISGLAAAWFYRERHPAARILVIENHDDFGGHAKRNEFQAGGRTILGYGGSESLQSPNALYSE
DAKHLLKRLGVELKRFETAFDTDFYPGLGLSRAVFFDKASFGVDKLVSGDPTPMVADEVPRDRLNARSWRAF
IGDFPLSREDREALIALYESPRDYLAGKSVEEKETYLAKTSYRDYLLKNVGLSETSVKYFQGRSNDFSALGA
DALPAADAYAAGFPGFDALGLPQPSEEAQAEMDEPYIYHFPDGNASLARLMVRDLIPAVAPGRGMEDIVMAR
FDYSKLDLAGHPVRLRLNSTAVSVRNRAGGVDVGYSRAGRLHRVRGKHCVMACYNMMVPYLLRDLSEEQAHA
LSQNVKFPLVYTKVLLRNWQAWKTLGIHEIYAPTLPYSRIKLDFPVDLGSYRHPRDPRQPIGVHMVYVPTTP
NAGMDARTQARVGRSKLYAMSFEQLEKDIRDQLQAMLGPAGFDHRRDITGITVNRWSHGYSYFMNTLYDDEA
ESEALMELARSKVGNVTIANSDAAWDAYAHAAIDQAVRAVRELG*

AnnotationID:430 GeneID:421

AnnotatorUID: diggins

Modification Date/Time: 2005-04-22 07:07:30

Gene Name:

Confidence Code: 3

GeneProduct: putative oxidase

Cell Localization: ()

Synonyms: PA3713

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:845

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17987

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31838

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 421_cdd.html

URL:

Homologs By Global Alignment

Gene ID:421

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

711 PA3713_tr translation of PA3713 620 99.83 99.83 0 3236.0

31944 gb|AAG07100.1|AE004790_5 (AE004790) hypothetical protein PA3713 [Pseudomonas aeruginosa PAO1] 620 99.83 99.83 0 3236.0

31945 gb|AAQ60724.1| (AE016921) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 625 59.52 75.52 5 1979.0

GC ORFID: `43423`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3713`	Glimmer Score:
Start: `3554091`	Stop: `3555953`
Length: `1863`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3713 translation of PA3713`	Homolog Bit Score `1251.0`
Other Homologs: `t_PA3713 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCATCTCCCGCCGCGACTTCCTGAACGGCGTAGCCCTGACCATCGCCGCAGGCCTGACCCCCGCCGAG ATCCTCCGCGCTGCCCCCGGCGGCCGCTACTATCCGCCCGCGCTCACCGGCCTGCGCGGTAGCCATCCGGGC GCCTTCGAAGTCGCACACCAGATGGGCTGGGAGAAGAAGACCTTCGATGTCGACCACCTGCCGATCGAAGAG GAATACGACCTGGTGGTGGTCGGCGGCGGCATCAGCGGCCTCGCCGCCGCCTGGTTCTATCGCGAACGGCAC CCCGCGGCGCGCATCCTCGTCATCGAGAACCACGACGACTTCGGCGGCCATGCCAAGCGCAACGAATTCCAG GCCGGCGGGCGCACCATCCTCGGCTACGGCGGCAGCGAGTCGCTGCAATCGCCGAACGCCCTCTACAGCGAA GACGCCAAACACCTGCTGAAACGCCTGGGCGTCGAGCTCAAGCGCTTCGAGACAGCCTTCGACACCGACTTC TACCCCGGCCTGGGCCTGTCCCGCGCGGTGTTCTTCGACAAGGCCAGCTTCGGCGTGGACAAGCTGGTCAGC GGCGACCCGACGCCGATGGTTGCCGACGAGGTCCCCCGCGATCGTCTCAATGCCCGCTCCTGGCGCGCCTTC ATCGGCGATTTCCCGCTGAGCCGCGAAGACCGGGAGGCGCTCATCGCGCTGTACGAATCACCTCGCGACTAT CTTGCCGGCAAGAGCGTGGAAGAAAAGGAAACCTACCTGGCGAAGACCAGCTACCGCGACTACCTGCTCAAG AACGTCGGGCTCTCGGAAACCTCGGTGAAGTACTTCCAGGGCCGCAGCAACGACTTCTCTGCCCTCGGCGCC GACGCCCTGCCGGCGGCTGACGCATACGCCGCCGGCTTCCCCGGCTTCGACGCCCTCGGCCTGCCGCAACCC AGCGAGGAGGCCCAGGCGGAAATGGACGAGCCGTACATCTACCATTTCCCCGACGGCAACGCCTCGCTGGCT CGGCTCATGGTGCGCGACCTGATCCCCGCGGTGGCGCCGGGCCGAGGCATGGAGGACATCGTCATGGCCCGC TTCGACTACTCGAAGCTGGACCTCGCCGGGCATCCGGTGCGCCTGCGCCTGAACAGCACCGCCGTCAGCGTG CGCAACCGCGCCGGCGGCGTCGATGTCGGCTACAGCCGCGCCGGCCGCCTGCACCGGGTACGCGGCAAACAC TGCGTGATGGCCTGCTACAACATGATGGTGCCGTACCTGCTGCGCGACCTCTCCGAGGAGCAGGCCCACGCG CTGAGCCAGAACGTCAAGTTCCCGCTGGTGTACACCAAGGTATTGCTGCGCAACTGGCAGGCCTGGAAGACC CTCGGCATCCACGAGATCTACGCGCCGACCCTGCCCTACTCGCGGATCAAGCTGGACTTCCCGGTCGACCTC GGCAGCTACCGGCACCCGCGCGACCCGCGGCAGCCGATCGGCGTGCACATGGTCTACGTGCCGACCACCCCG AACGCCGGCATGGACGCCCGCACCCAGGCTCGCGTAGGCCGCAGCAAGCTCTACGCGATGAGCTTCGAGCAA CTGGAAAAGGACATCCGCGACCAGCTCCAGGCCATGCTCGGCCCGGCCGGCTTCGACCACCGTCGCGACATC ACCGGCATCACCGTGAACCGCTGGTCGCACGGCTACTCCTACTTCATGAATACCCTCTACGACGACGAGGCG GAAAGCGAAGCGCTGATGGAACTGGCGCGAAGCAAGGTCGGCAATGTCACCATCGCCAACTCGGATGCGGCC TGGGATGCCTACGCCCATGCCGCCATCGACCAGGCGGTGCGGGCAGTCCGCGAATTGGGTTGA