ViewGene
Locus Name:
GeneID:
Location:

GeneID:4209
TrivialName: PA14_01790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01790
PAO1 Ortholog Locus:PA0145
Sequence Length:519
Protein Length:172
Start: 164590
Stop: 164072
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03535.1|AE004452_7 (AE004452) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 168/172 (97%), Positives = 170/172 (98%)
Sequence:
ATGACCGCGATCTACCTGGCCGGGCCGGACGTCTTCCGCCCCGACGCCGAGGCCCACGGCGAAATGCTCAAG
GCGCTCTGCGCCGAGTTCGGTTTCCTCGGCCTCTATCCGCTCGACCACGCCCTGCCCGCCGACATCCGCGAG
CCGGCCGCCCAGGCCGCCTGGGTCTACCGCGCCAATGTCGGCCTGATCGAGCGCGCCGACTGCGTGCTGGCC
AACCTCGAACCGTTCCGCGGCAGCGAGCCGGACAGCGGCACCGCCTTCGAAGTGGGCTACGCCCTGGCCCTG
GGCAAGCCGGTATATGCCTACCTCAGCGATGCCGGCGCCTACGCCGAGCGCCTCGCCCGGCTGGCCCCGGAA
TGGCTCGGCGAGCGCCCCGGCGAGGACCGCGACGGTTGGCAACTGGAGGGTTTCGGCCTGCCATTGAACCTG
ATGCTGGCGGTGCCTTCGCGGCTGGTCGCCGGCGGTCCGCGCGAGGCCCTGCGACGCCTCGCCGAGGAACTC
GGCGGGAACGCCTGA
Translation:
MTAIYLAGPDVFRPDAEAHGEMLKALCAEFGFLGLYPLDHALPADIREPAAQAAWVYRANVGLIERADCVLA
NLEPFRGSEPDSGTAFEVGYALALGKPVYAYLSDAGAYAERLARLAPEWLGERPGEDRDGWQLEGFGLPLNL
MLAVPSRLVAGGPREALRRLAEELGGNA*
AnnotationID:4216GeneID:4209
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:35
Gene Name:
Confidence Code:3
GeneProduct:putative nucleoside 2-deoxyribosyltransferase
Cell Localization:()
Synonyms:PA0145
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3613,pfam05014
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3613, COG3613, Nucleoside 2-deoxyribosyltransferase 
[Nucleotide transport and metabolism]
CD-Length = 172 residues,  98.3% aligned
Score =  185 bits (472), Expect = 2e-48
Identities = 95/171 (55%), Positives = 105/171 (61%), Gaps = 3/171 (1%)

pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase.
CD-Length = 134 residues,  99.3% aligned
Score =  136 bits (343), Expect = 2e-33
Identities = 72/151 (47%), Positives = 84/151 (55%), Gaps = 19/151 (12%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8420




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25561




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33501




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4209_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4209
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6495
                           PA0145_tr
                           translation of PA0145
                           172
                           97.67
                           98.83
                           0
                           886.0
     

     
     
176655
                           gb|AAG03535.1|AE004452_7
                           (AE004452) hypothetical protein PA0145 [Pseudomonas aeruginosa PAO1]
                           172
                           97.67
                           98.83
                           0
                           886.0
     

     
     
6496
                           PA0144_tr
                           translation of PA0144
                           210
                           56.66
                           63.33
                           40
                           611.0
     

     
     
176656
                           gb|AAG03534.1|AE004452_6
                           (AE004452) hypothetical protein PA0144 [Pseudomonas aeruginosa PAO1]
                           210
                           56.66
                           63.33
                           40
                           611.0
     

     
     
176658
                           emb|CAE35336.1|
                           (BX640452) conserved hypothetical [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           176
                           53.40
                           65.34
                           9
                           432.0
     

     






      

          
GC ORFID: 47211How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0145Glimmer Score: 

          
Start: 5965929Stop: 5965411

          
Length: 519


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0145 translation of PA0145Homolog Bit Score 345.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7711 (ORF: BLASTX 122.0), t_PA0145 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCGATCTACCTGGCCGGGCCGGACGTCTTCCGCCCCGACGCCGAGGCCCACGGCGAAATGCTCAAG 
GCGCTCTGCGCCGAGTTCGGTTTCCTCGGCCTCTATCCGCTCGACCACGCCCTGCCCGCCGACATCCGCGAG 
CCGGCCGCCCAGGCCGCCTGGGTCTACCGCGCCAATGTCGGCCTGATCGAGCGCGCCGACTGCGTGCTGGCC 
AACCTCGAACCGTTCCGCGGCAGCGAGCCGGACAGCGGCACCGCCTTCGAAGTGGGCTACGCCCTGGCCCTG 
GGCAAGCCGGTATATGCCTACCTCAGCGATGCCGGCGCCTACGCCGAGCGCCTCGCCCGGCTGGCCCCGGAA 
TGGCTCGGCGAGCGCCCCGGCGAGGACCGCGACGGTTGGCAACTGGAGGGTTTCGGCCTGCCATTGAACCTG 
ATGCTGGCGGTGCCTTCGCGGCTGGTCGCCGGCGGTCCGCGCGAGGCCCTGCGACGCCTCGCCGAGGAACTC 
GGCGGGAACGCCTGA