ViewGene
Locus Name:
GeneID:
Location:

GeneID:4207
TrivialName: PA14_61910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61910
PAO1 Ortholog Locus:PA4680
Sequence Length:537
Protein Length:178
Start: 5521510
Stop: 5520974
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08067.1|AE004881_10 (AE004881) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 177/178 (99%), Positives = 177/178 (99%)
Sequence:
ATGGCCAAGCAGACTCATCCACTGGCAGGCGGCATCGGCATCCTCGCGGCGCTGGCGCTGCTGTTCAGCGCT
TCGGCCGGGGCCGAGTTGCGCTCGCTGGGCGATAGCGATCTGGACGACGTGGTCGGCCAGGCCGGGATCAGC
ATCAGCGCCTCGCTCAATCTCCAGGAAAATCCTTCGCAGACGCGCTGCGCCGGCGGCTGCGGCGCGCGCCTG
GCGATCCAGCCGGCCGGCAGCGGCAACAACTACCTGGTGATCGACGATATCAGCGGCAAGTTCAGCTTCGAC
GAAGTCACCCTGGACGTGGTGACCATCAAGGACGGCTTCGGCGGCGACGGCGCTGCCTTCAACCGCCCGGTG
CTGCGCGTCGGCCTGAAGGACACCAGCTTCCAGGACCTGCGCTTCACCATCGCTGGCGCCAACAAGGCGCGC
GGTACCGATCCCGGGCTGGTGCAGACCAACCTGGTCAGCGCACGCATCGACGGCACCCTCAAGCTGCAAGGC
AACGTCAACATCTTCACCGTCGCCCCGCGTTGA
Translation:
MAKQTHPLAGGIGILAALALLFSASAGAELRSLGDSDLDDVVGQAGISISASLNLQENPSQTRCAGGCGARL
AIQPAGSGNNYLVIDDISGKFSFDEVTLDVVTIKDGFGGDGAAFNRPVLRVGLKDTSFQDLRFTIAGANKAR
GTDPGLVQTNLVSARIDGTLKLQGNVNIFTVAPR*
AnnotationID:4214GeneID:4207
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 08:08:16
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4680
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8416




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25557




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4207
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6493
                           PA4680_tr
                           translation of PA4680
                           178
                           99.43
                           99.43
                           0
                           886.0
     

     
     
176638
                           gb|AAG08067.1|AE004881_10
                           (AE004881) hypothetical protein PA4680 [Pseudomonas aeruginosa PAO1]
                           178
                           99.43
                           99.43
                           0
                           886.0
     

     






      

          
GC ORFID: 47209How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4680Glimmer Score: 

          
Start: 4785190Stop: 4784654

          
Length: 537


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4680 translation of PA4680Homolog Bit Score 345.0

          
Other Homologs:  t_PA4680 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAGCAGACTCATCCACTGGCAGGCGGCATCGGCATCCTCGCGGCGCTGGCGCTGCTGTTCAGCGCT 
TCGGCCGGGGCCGAGTTGCGCTCGCTGGGCGATAGCGATCTGGACGACGTGGTCGGCCAGGCCGGGATCAGC 
ATCAGCGCCTCGCTCAATCTCCAGGAAAATCCTTCGCAGACGCGCTGCGCCGGCGGCTGCGGCGCGCGCCTG 
GCGATCCAGCCGGCCGGCAGCGGCAACAACTACCTGGTGATCGACGATATCAGCGGCAAGTTCAGCTTCGAC 
GAAGTCACCCTGGACGTGGTGACCATCAAGGACGGCTTCGGCGGCGACGGCGCTGCCTTCAACCGCCCGGTG 
CTGCGCGTCGGCCTGAAGGACACCAGCTTCCAGGACCTGCGCTTCACCATCGCTGGCGCCAACAAGGCGCGC 
GGTACCGATCCCGGGCTGGTGCAGACCAACCTGGTCAGCGCACGCATCGACGGCACCCTCAAGCTGCAAGGC 
AACGTCAACATCTTCACCGTCGCCCCGCGTTGA