ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4206

TrivialName: PA14_09480

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_09480

PAO1 Ortholog Locus: PA4210

Sequence Length: 489

Protein Length: 162

Start: 813135

Stop: 812647

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07597.1|AE004838_1 (AE004838) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1] Identities = 160/162 (98%), Positives = 161/162 (99%)

Sequence:

ATGAACGGTCAGCGGTACAGGGAAACACCCCTCGACATCGAGCGTCTGCGGCGCCTGAATCGCGCCACGGTG
GAGCGCTACATGGCCATGAAGGGGGCCGAACGGTTACAGCGGCACAGCCTGTTCGTCGAGGACGGCTGCGCC
GGCAACTGGACCACGGAAAGCGGCGAACCCCTGGTTTTCCGGGGCCATGAGAGCCTCAGGCGGCTCGCCGAG
TGGCTCGAGCGCTGCTTCCCCGACTGGGAGTGGCGCAACGTGCGGATCTTCGAGACCGAGGATCCGAACCAC
TTCTGGGTCGAGTGCGACGGGCGCGGCAAGGCGCTGGTCCCGGGGTATCCGCAGGGCTATTGCGAGAACCAC
TACATCCATTCCTTCGAACTCGAGAACGGCCGGATAAAACGCAATCGCGAGTTCATGAACCCGATGCAGAAA
TTGCGTGCATTGGGAATAGCCGTTCCGCAAATAAAACGTGACGGTATTCCCACTTGA

Translation:

MNGQRYRETPLDIERLRRLNRATVERYMAMKGAERLQRHSLFVEDGCAGNWTTESGEPLVFRGHESLRRLAE
WLERCFPDWEWRNVRIFETEDPNHFWVECDGRGKALVPGYPQGYCENHYIHSFELENGRIKRNREFMNPMQK
LRALGIAVPQIKRDGIPT*

AnnotationID:4213 GeneID:4206

AnnotatorUID: danlee

Modification Date/Time: 2003-11-12 16:04:05

Gene Name: phzA1

Confidence Code: 1

GeneProduct: probable phenazine biosynthesis protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (23) Secreted Factors (toxins, enzymes, alginate)

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

corresponds to PA4210 of PAO1 (based on sequence and chromosomal
context).

Structural Features:

Genomic Context:

Operon phzA1B1C1D1E1F1G1 (in PAO1).

Comment:

ReferenceID:8414

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25555

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4206

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6489 PA4210_tr translation of PA4210 162 98.76 99.38 0 886.0

176623 gb|AAG07597.1|AE004838_1 (AE004838) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1] 162 98.76 99.38 0 886.0

176624 gb|AAC64489.1| (AF005404) PhzA [Pseudomonas aeruginosa] 162 98.14 98.76 0 881.0

6490 PA1899_tr translation of PA1899 163 89.57 91.41 2 790.0

176625 gb|AAG05288.1|AE004616_2 (AE004616) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1] 163 89.57 91.41 2 790.0

GC ORFID: `47208`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4210`	Glimmer Score:
Start: `4140802`	Stop: `4141290`
Length: `489`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4210 translation of PA4210`	Homolog Bit Score `345.0`
Other Homologs: `t_PA1899 (ORF: BLASTX 310.0), t_PA4211 (ORF: BLASTX 231.0), t_PA1900 (ORF: BLASTX 229.0), t_PA4210 (ORF: GLIMMER)`
GC ORF Sequence
`ATGAACGGTCAGCGGTACAGGGAAACACCCCTCGACATCGAGCGTCTGCGGCGCCTGAATCGCGCCACGGTG GAGCGCTACATGGCCATGAAGGGGGCCGAACGGTTACAGCGGCACAGCCTGTTCGTCGAGGACGGCTGCGCC GGCAACTGGACCACGGAAAGCGGCGAACCCCTGGTTTTCCGGGGCCATGAGAGCCTCAGGCGGCTCGCCGAG TGGCTCGAGCGCTGCTTCCCCGACTGGGAGTGGCGCAACGTGCGGATCTTCGAGACCGAGGATCCGAACCAC TTCTGGGTCGAGTGCGACGGGCGCGGCAAGGCGCTGGTCCCGGGGTATCCGCAGGGCTATTGCGAGAACCAC TACATCCATTCCTTCGAACTCGAGAACGGCCGGATAAAACGCAATCGCGAGTTCATGAACCCGATGCAGAAA TTGCGTGCATTGGGAATAGCCGTTCCGCAAATAAAACGTGACGGTATTCCCACTTGA`