ViewGene
Locus Name:
GeneID:
Location:

GeneID:4205
TrivialName: PA14_13320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13320
PAO1 Ortholog Locus:PA3911
Sequence Length:516
Protein Length:171
Start: 1143892
Stop: 1144407
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07298.1|AE004808_8 (AE004808) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 170/171 (99%), Positives = 171/171 (100%)
Sequence:
ATGCTGAACCGCCAACGCCTGCTCCtCGGCGTCGCCGGACGCCTGTTGCCGCTGGCGGCGAAGGTTCCGCGC
GGGCTCCAGCACCTGGTCCTGCAACGGGTCGCCAACCGGCTGTTCGCCCAGCCGCTGGAGGAGGGCGCCTTC
GACCTGCTGGAAGGTCGCTGGCTGCGCCTGGAAGTCAGGGACCTCGGCGTCGGCTGGTGCGTCACCCGGGTA
CCCGGCGGCCTGCGCCTGGTCGAACGGCCACGGGCCAGCGTGACCATCCGCGGCGACTGGCGCGACTTCCTG
CTGCTGGCCAGCCGGCATGAGGACCCGGATACCCTGTTCTTCCGCCGCCGCCTGGTGATCGAGGGCGACACC
GAGCTGGGCCTGGCGGTCAAGAACCTCCTCGACAGCCTCGATCCGGAGCACCTGCCGCCCTGGTTGTGGAGC
GCCGTGGAACGGGCCGGGCGGGCCGTGCAGGAGGAGCGCGGCGAGGCGCCCCAGGGGCCGGTCCAGGGGGCG
CGGGGCGGCTGA
Translation:
MLNRQRLLLGVAGRLLPLAAKVPRGLQHLVLQRVANRLFAQPLEEGAFDLLEGRWLRLEVRDLGVGWCVTRV
PGGLRLVERPRASVTIRGDWRDFLLLASRHEDPDTLFFRRRLVIEGDTELGLAVKNLLDSLDPEHLPPWLWS
AVERAGRAVQEERGEAPQGPVQGARGG*
AnnotationID:4212GeneID:4205
AnnotatorUID: urbach
Modification Date/Time: 2004-03-10 19:07:46
Gene Name:
Confidence Code:3
GeneProduct:Putative lipid carrier protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3154,pfam02036
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8412




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17094




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4205_CDD.html


    		




 
URL:

















    ReferenceID:25553




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4205
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6488
                           PA3911_tr
                           translation of PA3911
                           171
                           99.41
                           99.99
                           0
                           886.0
     

     
     
176607
                           gb|AAG07298.1|AE004808_8
                           (AE004808) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           171
                           99.41
                           99.99
                           0
                           886.0
     

     
     
176609
                           emb|CAC92706.1|
                           (AJ414157) putative lipid carrier protein [Yersinia pestis CO92]
                           177
                           42.93
                           57.06
                           10
                           301.0
     

     
     
176614
                           dbj|BAB37461.1|
                           (AP002564) hypothetical protein [Escherichia coli O157:H7]
                           181
                           38.67
                           56.90
                           17
                           287.0
     

     
     
176613
                           gb|AAA57960.1|
                           (U18997) ORF_f174 [Escherichia coli]
                           181
                           38.67
                           56.90
                           17
                           287.0
     

     






      

          
GC ORFID: 47207How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3911Glimmer Score: 

          
Start: 3810046Stop: 3809531

          
Length: 516


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3911 translation of PA3911Homolog Bit Score 345.0

          
Other Homologs:  t_PA3911 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAACCGCCAACGCCTGCTCCtCGGCGTCGCCGGACGCCTGTTGCCGCTGGCGGCGAAGGTTCCGCGC 
GGGCTCCAGCACCTGGTCCTGCAACGGGTCGCCAACCGGCTGTTCGCCCAGCCGCTGGAGGAGGGCGCCTTC 
GACCTGCTGGAAGGTCGCTGGCTGCGCCTGGAAGTCAGGGACCTCGGCGTCGGCTGGTGCGTCACCCGGGTA 
CCCGGCGGCCTGCGCCTGGTCGAACGGCCACGGGCCAGCGTGACCATCCGCGGCGACTGGCGCGACTTCCTG 
CTGCTGGCCAGCCGGCATGAGGACCCGGATACCCTGTTCTTCCGCCGCCGCCTGGTGATCGAGGGCGACACC 
GAGCTGGGCCTGGCGGTCAAGAACCTCCTCGACAGCCTCGATCCGGAGCACCTGCCGCCCTGGTTGTGGAGC 
GCCGTGGAACGGGCCGGGCGGGCCGTGCAGGAGGAGCGCGGCGAGGCGCCCCAGGGGCCGGTCCAGGGGGCG 
CGGGGCGGCTGA