ViewGene
Locus Name:
GeneID:
Location:

GeneID:4203
TrivialName: PA14_36150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36150
PAO1 Ortholog Locus:PA2208
Sequence Length:531
Protein Length:176
Start: 3221381
Stop: 3221911
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05596.1|AE004647_5 (AE004647) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 172/176 (97%), Positives = 174/176 (98%)
Sequence:
ATGTCCAGCTCATCCAATGCGCCGCTGGTCGCCACCCGCTGGGTGGAGATCGGCCTGGCGCTGTTCACCGCC
GCGCTCGGCGCGATCGTCATGTACGGCAGCCAGGATATCGGCATCGGCTGGGGCGACAGCGGCCCCGAGGCC
GGCTATTTCCCCTTCTACATCGGCCTGCTGCTGAGCGCCGCCAGCCTCGGCAACCTGCTCATGGCCCTGTGC
CGCTGGCGGGCGCTGGGTACCTCGTTCGTCGCCCGCGCGGCCTTTCGCCGGGTGCTTGCGGTGTTCCTGCCG
ATCGCCGCCTACGTGGCGGCCATGCCGTTCGCCGGGATCTACCTCGCCTCCGCGTTGTTCATCGCCTGGTTC
ATGTGGCGCGACCGCAGCCGCGACAAACCCTACGGCGTGCCGCTGATCGTCACGCTGTCCTGCGGCGCGGCG
CTGGCCAGCTACCTGGTCTTCGCCGTCTGGTTCAAGGTGCCGCTGGATGCCGGAATACTGGCCGACCTCGCG
GCCTTCGTCGGGAGCGCCAGGCCATGA
Translation:
MSSSSNAPLVATRWVEIGLALFTAALGAIVMYGSQDIGIGWGDSGPEAGYFPFYIGLLLSAASLGNLLMALC
RWRALGTSFVARAAFRRVLAVFLPIAAYVAAMPFAGIYLASALFIAWFMWRDRSRDKPYGVPLIVTLSCGAA
LASYLVFAVWFKVPLDAGILADLAAFVGSARP*
AnnotationID:4210GeneID:4203
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 19:07:19
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2208
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8408




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25549




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4203
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6486
                           PA2208_tr
                           translation of PA2208
                           176
                           97.72
                           98.86
                           0
                           884.0
     

     
     
176603
                           gb|AAG05596.1|AE004647_5
                           (AE004647) hypothetical protein PA2208 [Pseudomonas aeruginosa PAO1]
                           176
                           97.72
                           98.86
                           0
                           884.0
     

     






      

          
GC ORFID: 47205How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2208Glimmer Score: 

          
Start: 1732535Stop: 1732005

          
Length: 531


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2208 translation of PA2208Homolog Bit Score 345.0

          
Other Homologs:  t_PA2208 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAGCTCATCCAATGCGCCGCTGGTCGCCACCCGCTGGGTGGAGATCGGCCTGGCGCTGTTCACCGCC 
GCGCTCGGCGCGATCGTCATGTACGGCAGCCAGGATATCGGCATCGGCTGGGGCGACAGCGGCCCCGAGGCC 
GGCTATTTCCCCTTCTACATCGGCCTGCTGCTGAGCGCCGCCAGCCTCGGCAACCTGCTCATGGCCCTGTGC 
CGCTGGCGGGCGCTGGGTACCTCGTTCGTCGCCCGCGCGGCCTTTCGCCGGGTGCTTGCGGTGTTCCTGCCG 
ATCGCCGCCTACGTGGCGGCCATGCCGTTCGCCGGGATCTACCTCGCCTCCGCGTTGTTCATCGCCTGGTTC 
ATGTGGCGCGACCGCAGCCGCGACAAACCCTACGGCGTGCCGCTGATCGTCACGCTGTCCTGCGGCGCGGCG 
CTGGCCAGCTACCTGGTCTTCGCCGTCTGGTTCAAGGTGCCGCTGGATGCCGGAATACTGGCCGACCTCGCG 
GCCTTCGTCGGGAGCGCCAGGCCATGA