ViewGene
Locus Name:
GeneID:
Location:

GeneID:4201
TrivialName: PA14_44860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44860
PAO1 Ortholog Locus:PA1514
Sequence Length:510
Protein Length:169
Start: 3997636
Stop: 3998145
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04903.1|AE004580_3 (AE004580) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 169/169 (100%), Positives = 169/169 (100%)
Sequence:
ATGCGCACTCTCAAGATCGAGCCGTTGACCAAGGAAGCCTTCGCCCCGTTCGGTGACGTGATCGAAACCGCC
GGCAGCGACTATTTCATGATCAACAACGGCTCCACCCGCCGTTATCACAAGCTGGCCACGGTCGAGACCGCG
CAGCCGGAAGATAACGCGATCATCAGCATCTTCAGCGCCGAGAAGCTGGAAATGCCGTTGCGCATCCGCATG
CTGGAACGCCATCCGCTGGGCAGCCAGGCCTTCATCCCGCTGCTCGGCAACCCCTTTCTGGTCGTGGTCGCG
CCACTTGGCGATGTACCTGTACCGGGCCTCGTCCGCGCCTTCCTGACCAACGGAAGGCAGGGCGTCAATTAC
CACCGCGGCGTCTGGCACCATCCGGTGCTGACGATCGAAAAGCGGGATGACTTCCTGGTGGTCGATCGCAGC
GGTTCCGGGAACAACTGCGACGAGCATTTCTTCACCGAGGACGAACAGCTCCTCCTCGACCCCCAATCAAAC
CAATAA
Translation:
MRTLKIEPLTKEAFAPFGDVIETAGSDYFMINNGSTRRYHKLATVETAQPEDNAIISIFSAEKLEMPLRIRM
LERHPLGSQAFIPLLGNPFLVVVAPLGDVPVPGLVRAFLTNGRQGVNYHRGVWHHPVLTIEKRDDFLVVDRS
GSGNNCDEHFFTEDEQLLLDPQSNQ*
AnnotationID:4208GeneID:4201
AnnotatorUID: danlee
Modification Date/Time: 2005-09-27 16:04:02
Gene Name:
Confidence Code:2
GeneProduct:ureidoglycolate hydrolase
Cell Localization:()
Synonyms:allA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04115,COG3194
Secondary Functional Category(ies):
EC Number:3.5.3.19
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57138.1| (AE016869) ureidoglycolate hydrolase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 170

 Score =  279 bits (714), Expect = 4e-75
 Identities = 132/169 (78%), Positives = 149/169 (88%)

>gb|AAL52611.1| (AE009579) UREIDOGLYCOLATE HYDROLASE [Brucella melitensis 16M]
          Length = 169

 Score =  181 bits (459), Expect = 2e-45
 Identities = 89/157 (56%), Positives = 111/157 (70%), Gaps = 1/157 (0%)








 
Structural Features:
pfam04115, Ureidogly_hydro, Ureidoglycolate hydrolase. 
Ureidoglycolate hydrolase (EC:3.5.3.19) carried out the 
third step in the degradation of allantoin.
CD-Length = 163 residues, 100.0% aligned
Score =  257 bits (658), Expect = 4e-70
Identities = 104/163 (63%), Positives = 120/163 (73%)

COG3194, DAL3, Ureidoglycolate hydrolase 
[Nucleotide transport and metabolism]
CD-Length = 168 residues, 100.0% aligned
Score =  252 bits (646), Expect = 1e-68
Identities = 100/168 (59%), Positives = 114/168 (67%)






   
Genomic Context:






   
Comment:
other possible gene name: ybbT


















    ReferenceID:8404




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25545




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37327




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4201_cdd.html


    		




 
URL:

















    ReferenceID:38129




  
Author/Investigator(s):
        Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.





  
Title:
        Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.




  
PubMed:
        10601204


MedLine:
        




    
Source:
J Bacteriol. 1999 Dec;181(24):7479-84.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=10601204









           
Homologs By Global Alignment 

           

       



     
Gene ID:4201
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6484
                           PA1514_tr
                           translation of PA1514
                           169
                           99.99
                           99.99
                           0
                           886.0
     

     
     
176579
                           gb|AAG04903.1|AE004580_3
                           (AE004580) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           169
                           99.99
                           99.99
                           0
                           886.0
     

     
     
176580
                           gb|AAN69868.1|AE016626_3
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           169
                           81.65
                           89.94
                           2
                           744.0
     

     
     
176581
                           gb|AAO57138.1|
                           (AE016869) ureidoglycolate hydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           170
                           77.64
                           87.64
                           1
                           714.0
     

     
     
176582
                           gb|AAL52611.1|
                           (AE009579) UREIDOGLYCOLATE HYDROLASE [Brucella melitensis 16M]
                           172
                           52.90
                           66.86
                           6
                           455.0
     

     






      

          
GC ORFID: 47203How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1514Glimmer Score: 

          
Start: 956273Stop: 955764

          
Length: 510


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1514 translation of PA1514Homolog Bit Score 345.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene590 (ORF: BLASTX 277.0), t_PA1514 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACTCTCAAGATCGAGCCGTTGACCAAGGAAGCCTTCGCCCCGTTCGGTGACGTGATCGAAACCGCC 
GGCAGCGACTATTTCATGATCAACAACGGCTCCACCCGCCGTTATCACAAGCTGGCCACGGTCGAGACCGCG 
CAGCCGGAAGATAACGCGATCATCAGCATCTTCAGCGCCGAGAAGCTGGAAATGCCGTTGCGCATCCGCATG 
CTGGAACGCCATCCGCTGGGCAGCCAGGCCTTCATCCCGCTGCTCGGCAACCCCTTTCTGGTCGTGGTCGCG 
CCACTTGGCGATGTACCTGTACCGGGCCTCGTCCGCGCCTTCCTGACCAACGGAAGGCAGGGCGTCAATTAC 
CACCGCGGCGTCTGGCACCATCCGGTGCTGACGATCGAAAAGCGGGATGACTTCCTGGTGGTCGATCGCAGC 
GGTTCCGGGAACAACTGCGACGAGCATTTCTTCACCGAGGACGAACAGCTCCTCCTCGACCCCCAATCAAAC 
CAATAA